Paraburkholderia terrae: C2L65_10920
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Entry
C2L65_10920 CDS
T05318
Name
(GenBank) ATP-dependent helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pter
Paraburkholderia terrae
Pathway
pter03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pter00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C2L65_10920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pter03019
]
C2L65_10920
Enzymes [BR:
pter01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C2L65_10920
Messenger RNA biogenesis [BR:
pter03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C2L65_10920
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Fe-ADH
ERCC3_RAD25_C
AAA_22
HEM4
RPC3_helical
MerR-DNA-bind
Motif
Other DBs
NCBI-ProteinID:
AUT60057
UniProt:
A0A2I8EKD6
LinkDB
All DBs
Position
1:complement(2471164..2472624)
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AA seq
486 aa
AA seq
DB search
MSDTETTPTNATFDQFGLHADILKAIAEQGYTTPTPIQAEAIPVVLGGRDVMGAAQTGTG
KTAGFSLPIIQRLLPLASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTSLRSAV
VFGGVDMNPQSAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLP
DLQRILNLLPAERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTATNVTQIVYEVA
EGDKTGAVVKLIRDRGLKQVIVFCNSKIGASRLARQLERDGVVATAIHGDRTQSERMQAL
DAFKRGEIEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSL
FSPNERKQLADIEKLIKRPLDVQRLTVDTPVRHHHDERGAPRRERDDRGGSRRRTTGAHE
RPHGTHHRQQPVDDFFLKPYEPSPSAVSAAAKRDEAPAAPQKPASKQPLAALLGGFGMPR
KTTPSN
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacacagaaaccacgcctaccaacgcgaccttcgaccagttcggcctgcatgcc
gacattctcaaagccatcgcggaacagggctacacgacgccaacgccgatccaggccgag
gcgatccctgttgtactgggcggccgggacgtgatgggcgccgcgcagaccgggacgggc
aagacggcgggcttctcgctgccgatcatccagcgtctgctgccgctcgccagcacgagc
gcctcgccggcgcgccacccggtccgcgcgctgatccttacgccgacacgcgaactcgcc
gaccaggtcgccgcgaacgtgcaggcgtacgccaaacacacgtcgctgcgcagcgccgtc
gtgttcggcggcgtcgacatgaatccgcaatcggcggaactgcggcgcggcgtcgaaatc
ctgatcgcgacgccgggacgcctgctcgatcacgtgcagcagaagacggccaatctcggc
caggtgcagattctcgtgctcgacgaagccgaccggatgctcgacatgggcttcctgccc
gacttgcagcgcatcctgaacctgcttcccgccgagcgtcagacgctgctgttctcggcg
actttctcgcccgaaatcaagaagctcgcgtccacgtatctgcgcaatccgcagacgatc
gaagtggcgcgcagcaattcgacggcgaccaacgtcacgcagatcgtctacgaggtggcc
gagggcgacaagacgggcgccgtcgtgaaactgatccgcgaccgcggcctcaagcaggtc
atcgtgttctgcaacagcaagatcggcgcgagccgtcttgcgcgtcagctggagcgcgac
ggcgtggtcgccaccgcgattcacggcgaccgcacgcagagcgagcgcatgcaggcgctc
gacgcgttcaagcgcggcgagatcgaagcgctcgtcgcgacggacgtggcggcgcgcggt
ctcgacatcgccgagttgcccgccgtgatcaacttcgatctgccgttcaacgcggaagac
tacgttcaccggatcggccggacgggccgtgcgggcgcatcgggcgatgcgctgtcgctg
ttcagcccgaacgagcgcaagcagcttgccgacatcgagaagctgatcaagcggccgctc
gacgtgcagcgcctgaccgtcgatacgcccgtgcgtcatcatcacgatgagcgcggcgcg
ccgcgacgcgaacgcgacgatcgcggtggcagccgccgccgtacgacgggcgcgcacgag
cgtccgcatgggacgcaccatcgtcagcaacctgtcgacgatttcttcctgaagccgtat
gagccgtcgccttcggcggtgtcggctgctgccaagcgcgacgaagcgcctgccgcgccc
cagaagcccgcatcgaagcagccgctcgctgcgctgctgggcggcttcggtatgccgcgc
aagacgacgccttcgaactga
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