Paraburkholderia terrae: C2L65_43020
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Entry
C2L65_43020 CDS
T05318
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pter
Paraburkholderia terrae
Pathway
pter03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pter00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C2L65_43020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pter03019
]
C2L65_43020
03400 DNA repair and recombination proteins [BR:
pter03400
]
C2L65_43020
Enzymes [BR:
pter01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C2L65_43020
Messenger RNA biogenesis [BR:
pter03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C2L65_43020
DNA repair and recombination proteins [BR:
pter03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C2L65_43020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
HTH_20
RPA_C
TrmB
Motif
Other DBs
NCBI-ProteinID:
AUT66459
UniProt:
A0A2I8F3Z6
LinkDB
All DBs
Position
4:complement(278818..280584)
Genome browser
AA seq
588 aa
AA seq
DB search
MRRTLSDVFGLESLRPGQREIIESVMHGRDTLAIMPTGAGKSLCYQLPALHLNGLTLVVS
PLIALMKDQRDKLLAANVEALQINSTLNAAEERQAYEELKTASRAIVFVTPEQLTKPALL
DALRGRDDPYARGRSAWRGEVRRVSLIVVDEAHCISQWGHDFRPAFLQIAEAASSIGSPP
VLALTATATTAVVEDIVRTLGMRDPCVLHKGVYRSNLHYSVLQVSVAGGKRRASARSAQA
KLTALRTLLESRSDAGIIYTATVREAERLAAAIREWGVLAALYHGRISSRQRHDAQDGFM
RGDVRVMVATNAFGMGIDKADIRFVVHDQMPGSIGAYYQETGRAGRDGEAADCVLLFDLN
DRRIQQFLQLGRYPGRELIERVREALRKHDGVSTTGVSVDELARILGDVGRNKLQVALKI
LLDAGLVRRNRARRYLLRDGAPGGDALSASLHRYDEQAKRDRDALQQMIDYAQTGRCRWH
TILEHFGYGDELEQCGTCDNCRNPPHVEPVREPVLEGRMMDAARETPHAQRSFVRGQSVR
VRKFGIGQVTFATMDQVAVLFSDGTTRTFLARFVRAADAAHNAADSRR
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgcgccggacactgagcgacgtcttcggtctcgaatctctgcggccaggtcagcgcgag
atcatcgagagcgtgatgcacgggcgcgacactttggccatcatgccgacgggcgccggt
aaatcgctttgctaccagttgccggcgctgcacctgaacggcctgacgctggtcgtgtcg
ccgttgatcgcgctgatgaaagatcaacgcgacaagcttctcgcagcgaacgtcgaggca
ctgcagatcaacagcacgctaaacgccgccgaggagcggcaagcgtatgaagagctaaaa
acggcatcgcgtgcaatcgtcttcgtgacgcccgaacaactcaccaagccagcactgctg
gatgcgctccgcggacgggatgacccctacgcgcggggacgcagtgcatggcgtggcgag
gtacggcgggtaagtctgattgtggttgacgaagcccactgcatttcgcagtggggacat
gatttcagacccgcgttcctgcagatcgccgaagccgcgagcagtattggaagtccgccc
gtcctcgcgctcaccgccacggcgacgacggcggtcgtcgaagatatcgtacgcacgctc
ggcatgcgcgatccatgcgtgctgcacaagggcgtctaccggtcgaacttgcattacagc
gtccttcaggtgtcggtcgctggcggcaaacgacgcgcgtcagcgcgttctgcacaggcc
aagctcactgcgcttcgcaccttgctcgaatcgcgcagcgacgccggtattatctatacg
gcaacggtgcgcgaagcggaacgtctggcggcagcgattcgcgaatggggggtgcttgcc
gcgctctaccacggacggatcagttcccggcagcggcacgacgcgcaggacggcttcatg
cgcggcgacgtgcgcgtgatggttgcgaccaacgcattcggcatgggcatcgacaaggct
gacatacgctttgtcgtgcatgaccagatgccagggagcatcggtgcgtactatcaggag
accgggcgtgccggacgcgacggcgaagcagccgattgcgtgttgctgttcgatctcaac
gacaggcgtatccagcaatttctgcagctcggtcgctaccccgggcgtgaacttatcgag
cgcgtgcgcgaagcgctgcgaaagcatgacggcgtatcgacgacgggcgtgagtgtggac
gaactcgcacgcattctcggcgatgtcgggcgaaacaaactccaggttgcgcttaagata
ctgctcgacgccgggctcgtgcgtcgcaatcgcgcgcgccgctatctgctgcgcgatggc
gctcctggcggcgatgccctctcagcatcgctccaccgctacgacgaacaggcgaagcgc
gatcgcgacgcacttcaacagatgatcgactatgcgcaaacgggccgctgccgctggcac
acaatcctcgagcatttcggttatggcgacgaactcgaacagtgcggcacgtgcgacaac
tgccgtaacccgccgcatgtcgaacctgtccgcgagcccgttctcgaaggccggatgatg
gatgccgcgcgcgagacgcctcacgcgcagcgcagctttgtgcgtggccagtccgtgcga
gtgcgtaagtttggcatcggccaggtcacctttgcgacgatggatcaggttgccgtactg
ttttctgatgggacgacgcgcacgttcctcgcgcgattcgtcagggccgcggacgcggcg
cacaacgcagccgatagccgacgctga
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