KEGG   Paraburkholderia terrae: C2L65_43735
Entry
C2L65_43735       CDS       T05318                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pter  Paraburkholderia terrae
Pathway
pter03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pter00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    C2L65_43735 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pter03400]
    C2L65_43735 (ligD)
Enzymes [BR:pter01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     C2L65_43735 (ligD)
DNA repair and recombination proteins [BR:pter03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     C2L65_43735 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: AUT66554
UniProt: A0A2I8F663
LinkDB
Position
4:complement(424817..427339)
AA seq 840 aa
MASEHDPKSSTLSRYRRKRDFLVTPEPAPSASSLSAGGNLHFVVQKHWASRLHYDFRLEH
DGVLLSWAVPKGPCYDPKEKRMAIHVEDHPVEYSDFEGTIPKKQYGAGTVIVWDRGTWEP
VGDPKKSMNIGKLVFRLHGEKLAGLWELVRISKPGDRQDQWMLFKKRDEWARPLADFDVI
KALPDSVTMHPLGLIEAREPKAGHARIRAEPELDLSAAIAAPLPAKLEPQRATPASSLPT
GGDWITEAKLDGYRMLARIDRGRVRLFTSGGHDWTKKLASLAAEVESLPVSSGWLDGEIV
VLKDGLPDFGALQEAIDGAANQEIVFFLFDLPYLDGKDLRNVPLWMRRALLSGLLEGDRE
RIRFSQDFEAPPAQVFEAAAGLGLEGLMLKRRDARYESERTQTWLKAKCRLRQELVICGF
TARGGKDGEVGSLLLGYYESSKEGRRLHDAGSVGTGWDARTGRDLWRRLAPLETDSAPFD
IAVTKSRRWSRRAAGSERWVRPELVAEIEFAEWTADGVVRQASFKGLRVDKPARRVVREG
GQTLTRTRAVSQIKVTHPERIIDPSSGVTKLDLARFYESVASWLLPHLKDRPVAMVRAPD
GIEGEQFFQKHVERTGMPGITAHDRKLWPNHPPLLTIDTVDALMSAAQMNAVEFHTWNST
VRRIDKPDRVIFDLDPGEGVKWAHVQEAALLVHTLLNELGLQAWLKTSGGKGLHVVVPLA
PRLDYEAVKAFSKAFVRHLAKTIPERFSATSGASNRIGKIYVDYLRNGMAQTTAAAFSAR
ARRGMGVSVPVSWEQLPELKSGAQWTVQTAREYLSFETQDPWAAYWITTQSLASAIRRLQ
NT seq 2523 nt   +upstreamnt  +downstreamnt
atggcatctgagcacgacccgaagtcttcgacgctctcccgctatcgaaggaagcgggat
tttctggtcacgcccgaaccagcaccctcggcgtcgagcctgtccgcaggcgggaatctg
cacttcgtcgtccagaagcactgggccagccggttgcactatgacttccggctggagcac
gacggggtgctgttatcctgggccgtcccgaaaggcccgtgctacgacccgaaggaaaag
cgaatggccatccacgtggaggaccatcccgttgagtattcggatttcgaggggacgatc
ccgaagaagcagtatggtgccggcaccgtgatcgtgtgggaccgcggcacctgggagcca
gtcggcgatccgaagaaatcgatgaacattggcaaactggtcttccggctccacggtgaa
aagctcgccgggctctgggaactggtgcgcatatcaaagcccggtgaccggcaggaccag
tggatgttgttcaagaagcgtgacgagtgggcgcgcccgctcgccgatttcgatgtgatc
aaggcacttcccgacagcgtcacaatgcacccgctggggctcatcgaagcccgggagcca
aaggcggggcacgccaggatcagggcggagccagaactggatctctctgccgcgatcgcg
gcaccgttgcctgcgaagctcgagccgcagcgcgcgacgccggcgtcgtcgcttcccacg
ggcggcgactggatcaccgaggcaaaactcgacggctaccggatgcttgcgcggatcgac
aggggccgtgtgcgactgttcacgagcggcgggcacgactggacgaagaaactcgccagc
ctggcggcagaggtagaaagccttccggtgtcgagcggatggctggatggcgaaatcgtt
gtgctcaaggatggtctgccggatttcggtgccttgcaggaggcgatcgacggggccgca
aaccaagagattgtctttttcctgttcgacctgccgtacctcgacgggaaggatctccgg
aacgtcccgctgtggatgcggcgcgcgctgctctccgggttgcttgaaggcgacagggag
cgcatacggttcagtcaggatttcgaagcgccaccggcccaggttttcgaggccgccgcc
gggctgggcctggagggccttatgctcaagcgccgcgacgcgcggtatgagtcggagcgg
acgcagacatggctgaaggccaaatgccgtctgcggcaggaactggtcatctgtggcttc
accgcgcgcggaggcaaggatggcgaagtgggcagcctgctgcttggctactacgagagc
agcaaagagggccgcaggcttcacgacgcgggcagcgtgggtacaggctgggatgcccga
acgggtcgggatctgtggaggcgcttggcgccgctcgaaactgattcggcaccgttcgac
attgccgtcacgaaatcccggcgctggtcgcggcgcgcggcggggagcgagcgctgggtg
cgccccgaactggtcgctgagattgaattcgccgagtggacggcagacggcgtcgttcgg
caggcatcgttcaagggtttgcgggtcgacaagccagcgcggcgggttgtccgtgaaggc
ggccagacgctcacgcgtacgcgggccgtctcccagatcaaggtcacgcacccggagcgg
atcatcgacccgtcaagcggtgtgacgaagctcgacctcgcgcggttctacgagagcgtc
gcctcgtggctgctgccgcacctgaaggaccggcccgtggcaatggtgcgcgcgccagat
ggcatcgaaggcgaacagttcttccagaaacacgtcgaacggacgggcatgccgggaatc
acggcgcatgaccgcaagctctggccgaatcacccgccgctgctgaccatcgatactgtc
gacgcgctgatgtcggctgcccagatgaacgccgtggagtttcacacgtggaattccacc
gtccgccggatagacaagcctgaccgggtcatcttcgatctggacccgggagaaggggtg
aaatgggcacatgttcaggaggcggcgctgctcgtccacacactgctgaacgaactggga
ctgcaggcctggctgaagacgagcggcggcaaggggctgcacgtcgtcgtcccgctggcg
ccgaggctcgactatgaggcggtaaaggcattctcgaaggcattcgtgcggcatctggcg
aagacgattcccgagcgcttttcggcgacgtcgggtgcgtcaaaccgcatcggcaagatc
tacgtcgactatctgcgtaacgggatggcacagaccacggccgccgcgttttctgcgcgg
gcgcggcgagggatgggcgtgtcggtgccggtgtcatgggagcagctacccgaactcaaa
agcggcgcacaatggacggtccagacggcgcgggagtatctcagctttgagacgcaggac
ccgtgggcagcatactggatcaccacccagtcactggcatcggcgatccggcgcctacaa
tga

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