Paraburkholderia terrae: C2L65_43735
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Entry
C2L65_43735 CDS
T05318
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pter
Paraburkholderia terrae
Pathway
pter03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pter00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
C2L65_43735 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pter03400
]
C2L65_43735 (ligD)
Enzymes [BR:
pter01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
C2L65_43735 (ligD)
DNA repair and recombination proteins [BR:
pter03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
C2L65_43735 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AUT66554
UniProt:
A0A2I8F663
LinkDB
All DBs
Position
4:complement(424817..427339)
Genome browser
AA seq
840 aa
AA seq
DB search
MASEHDPKSSTLSRYRRKRDFLVTPEPAPSASSLSAGGNLHFVVQKHWASRLHYDFRLEH
DGVLLSWAVPKGPCYDPKEKRMAIHVEDHPVEYSDFEGTIPKKQYGAGTVIVWDRGTWEP
VGDPKKSMNIGKLVFRLHGEKLAGLWELVRISKPGDRQDQWMLFKKRDEWARPLADFDVI
KALPDSVTMHPLGLIEAREPKAGHARIRAEPELDLSAAIAAPLPAKLEPQRATPASSLPT
GGDWITEAKLDGYRMLARIDRGRVRLFTSGGHDWTKKLASLAAEVESLPVSSGWLDGEIV
VLKDGLPDFGALQEAIDGAANQEIVFFLFDLPYLDGKDLRNVPLWMRRALLSGLLEGDRE
RIRFSQDFEAPPAQVFEAAAGLGLEGLMLKRRDARYESERTQTWLKAKCRLRQELVICGF
TARGGKDGEVGSLLLGYYESSKEGRRLHDAGSVGTGWDARTGRDLWRRLAPLETDSAPFD
IAVTKSRRWSRRAAGSERWVRPELVAEIEFAEWTADGVVRQASFKGLRVDKPARRVVREG
GQTLTRTRAVSQIKVTHPERIIDPSSGVTKLDLARFYESVASWLLPHLKDRPVAMVRAPD
GIEGEQFFQKHVERTGMPGITAHDRKLWPNHPPLLTIDTVDALMSAAQMNAVEFHTWNST
VRRIDKPDRVIFDLDPGEGVKWAHVQEAALLVHTLLNELGLQAWLKTSGGKGLHVVVPLA
PRLDYEAVKAFSKAFVRHLAKTIPERFSATSGASNRIGKIYVDYLRNGMAQTTAAAFSAR
ARRGMGVSVPVSWEQLPELKSGAQWTVQTAREYLSFETQDPWAAYWITTQSLASAIRRLQ
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atggcatctgagcacgacccgaagtcttcgacgctctcccgctatcgaaggaagcgggat
tttctggtcacgcccgaaccagcaccctcggcgtcgagcctgtccgcaggcgggaatctg
cacttcgtcgtccagaagcactgggccagccggttgcactatgacttccggctggagcac
gacggggtgctgttatcctgggccgtcccgaaaggcccgtgctacgacccgaaggaaaag
cgaatggccatccacgtggaggaccatcccgttgagtattcggatttcgaggggacgatc
ccgaagaagcagtatggtgccggcaccgtgatcgtgtgggaccgcggcacctgggagcca
gtcggcgatccgaagaaatcgatgaacattggcaaactggtcttccggctccacggtgaa
aagctcgccgggctctgggaactggtgcgcatatcaaagcccggtgaccggcaggaccag
tggatgttgttcaagaagcgtgacgagtgggcgcgcccgctcgccgatttcgatgtgatc
aaggcacttcccgacagcgtcacaatgcacccgctggggctcatcgaagcccgggagcca
aaggcggggcacgccaggatcagggcggagccagaactggatctctctgccgcgatcgcg
gcaccgttgcctgcgaagctcgagccgcagcgcgcgacgccggcgtcgtcgcttcccacg
ggcggcgactggatcaccgaggcaaaactcgacggctaccggatgcttgcgcggatcgac
aggggccgtgtgcgactgttcacgagcggcgggcacgactggacgaagaaactcgccagc
ctggcggcagaggtagaaagccttccggtgtcgagcggatggctggatggcgaaatcgtt
gtgctcaaggatggtctgccggatttcggtgccttgcaggaggcgatcgacggggccgca
aaccaagagattgtctttttcctgttcgacctgccgtacctcgacgggaaggatctccgg
aacgtcccgctgtggatgcggcgcgcgctgctctccgggttgcttgaaggcgacagggag
cgcatacggttcagtcaggatttcgaagcgccaccggcccaggttttcgaggccgccgcc
gggctgggcctggagggccttatgctcaagcgccgcgacgcgcggtatgagtcggagcgg
acgcagacatggctgaaggccaaatgccgtctgcggcaggaactggtcatctgtggcttc
accgcgcgcggaggcaaggatggcgaagtgggcagcctgctgcttggctactacgagagc
agcaaagagggccgcaggcttcacgacgcgggcagcgtgggtacaggctgggatgcccga
acgggtcgggatctgtggaggcgcttggcgccgctcgaaactgattcggcaccgttcgac
attgccgtcacgaaatcccggcgctggtcgcggcgcgcggcggggagcgagcgctgggtg
cgccccgaactggtcgctgagattgaattcgccgagtggacggcagacggcgtcgttcgg
caggcatcgttcaagggtttgcgggtcgacaagccagcgcggcgggttgtccgtgaaggc
ggccagacgctcacgcgtacgcgggccgtctcccagatcaaggtcacgcacccggagcgg
atcatcgacccgtcaagcggtgtgacgaagctcgacctcgcgcggttctacgagagcgtc
gcctcgtggctgctgccgcacctgaaggaccggcccgtggcaatggtgcgcgcgccagat
ggcatcgaaggcgaacagttcttccagaaacacgtcgaacggacgggcatgccgggaatc
acggcgcatgaccgcaagctctggccgaatcacccgccgctgctgaccatcgatactgtc
gacgcgctgatgtcggctgcccagatgaacgccgtggagtttcacacgtggaattccacc
gtccgccggatagacaagcctgaccgggtcatcttcgatctggacccgggagaaggggtg
aaatgggcacatgttcaggaggcggcgctgctcgtccacacactgctgaacgaactggga
ctgcaggcctggctgaagacgagcggcggcaaggggctgcacgtcgtcgtcccgctggcg
ccgaggctcgactatgaggcggtaaaggcattctcgaaggcattcgtgcggcatctggcg
aagacgattcccgagcgcttttcggcgacgtcgggtgcgtcaaaccgcatcggcaagatc
tacgtcgactatctgcgtaacgggatggcacagaccacggccgccgcgttttctgcgcgg
gcgcggcgagggatgggcgtgtcggtgccggtgtcatgggagcagctacccgaactcaaa
agcggcgcacaatggacggtccagacggcgcgggagtatctcagctttgagacgcaggac
ccgtgggcagcatactggatcaccacccagtcactggcatcggcgatccggcgcctacaa
tga
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