Paralysiella testudinis: JQU52_01975
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Entry
JQU52_01975 CDS
T07686
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ptes
Paralysiella testudinis
Pathway
ptes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JQU52_01975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptes03019
]
JQU52_01975
03009 Ribosome biogenesis [BR:
ptes03009
]
JQU52_01975
Enzymes [BR:
ptes01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
JQU52_01975
Messenger RNA biogenesis [BR:
ptes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JQU52_01975
Ribosome biogenesis [BR:
ptes03009
]
Prokaryotic type
rRNA processing factors
JQU52_01975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
dnstrm_HI1420
Motif
Other DBs
NCBI-ProteinID:
QRQ83234
UniProt:
A0A892ZNM6
LinkDB
All DBs
Position
complement(355787..358507)
Genome browser
AA seq
906 aa
AA seq
DB search
MLFNATQAEELRVAIVDGQSLIDLDIETLGKEQRKGNIYKGVITRIEPSLEACFVDYGTD
RHGFLPFKEVSRSYFNDYDGGRARIQDVLSEGMEVIVQVEKDERGNKGAALTTFISLAGR
YLVLMPNNPRGGGVSRRIEGEDRQDLKAAMAELDVPRGMSLIARTAGIGRSAEELRWDMN
YLQQLWQAIEEAAKQHSEPYLLFMESALVIRAIRDYFQPDIGEILIDTQEVYDQVSEFMT
YVMPAYVSRLKHYNDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSVDVNS
ARATRGADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENSKHQRDVENTLRDA
LKQDRARVQMGKLSRFGLLELSRQRLKPSLGESSHTACPRCGGTGFIRGIESTALHVLRI
IQEESMKDNTAEVRAQVPVDVATFLLNEKRAELFGLEERMDVSVLLIPNTHLENPHYQVS
RVRTDNVEEDAAPSYQQVAAPENEGELPFAIGQNKPAKPEPAVKGIKHSQPAPVTAAAPQ
EQPGVFARLSAWLGKWFGGGDKAETEPKPEAAKTAARPPAQNQHNRKKRPQERRSQGQRN
ARQDERNGQQAEGRSRTQTGKPVQGNGQNQRGSEQREPREQRQDQTRTNNAKQGDNNAVD
NNSDDNAARNRRRQRNPRKEDVVGASVAEVANTAEQPPLVVTLPAETAAATAPAEESKRQ
NRQQKGQQDRRRGGKNQRRHIPSAEKIVRYLDVQEVVERVNAAVAHVLAPAHKPAQAVDA
PLVVETATPEAVAAEVEAHAVAPVQAVAVAAVETQAVAAQAIETQVVETATADAMAIIEP
PAPKAVPVLVMDLGDLVLVETRAEALAAAATQAAPATAAKLRRADVPRPAAVETEAVVLQ
QVETHK
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atgttattcaatgccacgcaagccgaagagctacgcgtggccattgttgacggccagagc
ttgattgatctggacatcgaaacgctgggcaaagaacagcgcaaaggcaatatctacaag
ggtgttatcacccgcatcgaaccctctttagaagcctgttttgtcgattacggcaccgat
aggcacggctttttgccgttcaaggaagtttcccgcagctatttcaacgactacgacggc
ggccgcgcacgcattcaagacgtcttgtctgaaggcatggaagtgattgtgcaggtggaa
aaagacgagcgcggcaacaaaggcgcggcgctcaccacctttatcagcctggccgggcgc
tatttggtattgatgccgaataatccgcgcggcggcggcgtgtcgcgccgcatcgaaggc
gaggatcggcaagacctgaaagcggccatggccgagctggacgtgccgcgcggcatgagc
ctgattgcacgcaccgccggcatcggccgcagcgccgaagagctgcgctgggacatgaac
tacctgcaacaattgtggcaggcaattgaagaagcggccaagcaacacagcgagccgtat
ctgctgtttatggaaagcgccttggtgattcgcgccatccgcgactacttccagcccgac
atcggcgaaatcctgattgatacccaagaagtgtacgaccaagtatcggaattcatgact
tatgtgatgcccgcctatgtgtcgcgcctgaagcactacaacgaccacacgccgctgttt
tcacgcttccaaatcgaacaccaaatcgaatcggcgttttcgcgctcggtaagcctgcct
tccggcggcgctatcgtgattgaccacaccgaagcgctggtgtcggtggatgtcaactcc
gcccgcgccacccgcggtgccgacatcgaagacaccgcattcaaaaccaatatggaagcg
gccgaagaagtggcgcggcaaatgcgcctgcgcgacttgggcggcttggtggtgatcgat
tttatcgacatggaaaacagtaagcatcagcgcgatgtggaaaacaccttgcgcgatgca
ctcaagcaagaccgcgcccgtgtgcaaatgggcaagctgtcgcgctttggcctgctggaa
ttaagtcgccagcgcctgaaaccttcgctgggcgaaagcagccacaccgcctgcccgcgt
tgcggcggcaccggctttatccgcggcatcgaatccaccgccttgcatgtgttgcgcatc
attcaagaagaatcgatgaaagacaacaccgccgaagtgcgcgcccaagtgccggtggat
gtggccaccttcttgctgaatgaaaaacgcgccgagctgttcggcttggaagaacgcatg
gatgtgtcggtgctgctgattccgaacacccatctggaaaacccgcattatcaagtgagc
cgcgtgcgcaccgacaatgtggaagaagacgcggcgcccagctaccagcaagtggccgcg
cctgaaaacgaaggcgagctgccgtttgccattggccaaaacaaaccggccaagccggag
ccggcggtaaaaggcatcaagcacagccaaccggcaccggtcactgcggcggcaccccaa
gagcagccgggcgtgtttgcgcgcttgtcggcttggttgggcaaatggtttggcggcggc
gacaaggccgaaaccgagccgaagccggaagcagccaaaaccgctgcccgcccgcccgcg
caaaaccagcacaaccgcaaaaaacgcccgcaagagcggcgcagccaaggccagcgcaac
gcccgtcaagacgagcgcaacggccagcaagccgaaggccgcagccgcacacaaacggga
aaaccggttcaaggcaacggccagaaccagcgtggcagcgagcaacgggaaccgcgcgag
cagcgccaagatcaaacccgcaccaacaacgccaagcaaggcgacaacaacgcggtagac
aacaacagcgacgacaacgccgcccgcaaccgccgccgtcaacgcaacccgcgtaaagag
gatgtggtgggcgcatcggtggccgaagtggccaataccgccgaacagccgccgctggtg
gtaaccctgcctgctgaaaccgcagcagcaaccgcgccggcggaagaaagcaaacgccaa
aaccgccagcaaaaaggccagcaagatcggcgtcgcggcggtaaaaaccagcgtcgtcat
attccatcggcagaaaaaatcgttcgctatctggatgtacaggaagtggtcgagcgcgtg
aatgcggcggtggcgcatgtattggcaccggcgcataaaccggcccaagccgttgacgca
cctttagtggttgagactgccacacccgaagcggtggcggctgaagttgaagcgcatgct
gttgcccccgtgcaagcggttgccgtggcggcggttgaaacgcaggcggtggcggctcaa
gctattgaaacgcaggtagtcgaaaccgccacagcggatgccatggccattattgaaccg
ccagcgcctaaagcagtgccggtgttggtgatggatttgggtgatttggtactggtggaa
acccgcgctgaagccttagctgctgctgccacacaagcagcaccggccacggccgccaag
ctgcgccgcgctgatgtgccgcgcccggcggcggtggaaaccgaagccgtggtattgcag
caggtggaaacgcataaatag
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