Paralysiella testudinis: JQU52_04010
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Entry
JQU52_04010 CDS
T07686
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ptes
Paralysiella testudinis
Pathway
ptes03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ptes00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JQU52_04010 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptes03021
]
JQU52_04010 (rpoC)
03400 DNA repair and recombination proteins [BR:
ptes03400
]
JQU52_04010 (rpoC)
Enzymes [BR:
ptes01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JQU52_04010 (rpoC)
Transcription machinery [BR:
ptes03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JQU52_04010 (rpoC)
DNA repair and recombination proteins [BR:
ptes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JQU52_04010 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
Peptidase_M23
RPOC_hybrid
DUF7691
Motif
Other DBs
NCBI-ProteinID:
QRQ82566
UniProt:
A0A892ZLJ8
LinkDB
All DBs
Position
785401..789582
Genome browser
AA seq
1393 aa
AA seq
DB search
MKALLDLFNPLQAGSDEEFDAIKIGIASPETIRSWSYGEVKKPETINYRTFKPERDGLFC
AKIFGPIKDYECLCGKYKRLKFKGVTCEKCGVEVTLSKVRRERMGHIDLAAPVAHIWFLK
SLPSRLGMVLDMTLRDIERILYFEAFVVTDPGMTSMQRRQLLTEEDFYAKYEEFGGDFEA
KMGAEGIRDLLRGLDIAQEVATLRQELDATSSDTKIKKIAKRLKVLEAFQRSGMKLEWMI
MDVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELRAPDIIVRNEKRM
LQEAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVITVG
PYLRLHQCGLPKKMALELFKPFIFHKLEVLGLASTVKAAKKLVEQEVAEVWDILEDVIRE
HPILLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQM
EARTLMLASNNVLSPANGEPIIVPSQDIVLGLYYMTRDKINAKGEGSLFADVKEVHRAYQ
TRQVELSTKITVRLREWVKNDQDEFEPVINRYETTVGRALLSEILPKGLPFEYINKALKK
KEISRLINASFRLCGLRDTVIFADHLMYTGFAYSTRGGISICVDDMEVPAKKAELLAEAQ
HEVKEIEEQYRQGLVTNGERYNKVVDIWGRTGDKIAKAMMDNLSTQKTTDRDGKEVDQES
FNSIYMMADSGARGSAAQIKQLSGMRGLMAKPDGSIIETPITSNFREGLTVLQYFISTHG
ARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTTDGFVMKAVVQGGDVIEPLRDR
ILGRVTAADVVDPSTGETLVETGTMLNEAMVDMIDNSGIDEVKVRTPITCKTRYGLCAKC
YGRDLARGKLVNSGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAASQVEAKSGGVV
RFSSQMRYVANNKGELVVIGRSSEVVIHDDIGRERERHKVPYGAILLVKDGETVKAGQTL
ATWDPHTRPMITEHAGRVRFENIEEGVTVAKQTDDVTGLSTLVVIDGKRRSATQSKLLRP
LVKLLDENGEEVKMPGGDAPVSMAFPVGAVITVREGQEIGKGDVLARIPQASTKTRDITG
GLPRVAELFEARTPKDAGMLAEVTGTVSFGKETKGKQRLVITDVDGVAYETLISKEKQVL
VHDGQVVNRGETIVDGSVDPHDILRLQGIEALTRYIVQEVQEVYRLQGVKISDKHIEVII
RQMLRRVNIADSGESHFITGEQVERADVMAANEKLEAEGKEPVRFDNILLGITKASLSTD
SFISAASFQETTRVLTEAAIMGKKDDLRGLKENVIVGRLIPAGTGLTHHRTRRQQFADEM
RAAAEVAAEEPQA
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
atgaaagccttattagacttgtttaatccgctgcaagccggtagcgacgaagaatttgac
gccatcaaaatcggcattgcctcgcccgaaaccatccgttcttggtcttacggcgaagtg
aaaaaaccggaaaccatcaactaccgcaccttcaagcccgaacgcgacggcttgttttgc
gccaagatttttggcccgattaaagactacgaatgcttgtgcggtaaatacaaacgcttg
aaattcaaaggtgttacctgcgaaaaatgcggtgtggaagtgaccttgtccaaagtgcgt
cgcgaacgcatggggcacatcgatttggccgcaccggtggcgcacatctggtttttgaaa
tccttgccgtcccgtttgggcatggtgttggacatgaccttgcgcgacatcgaacgcatt
ttgtattttgaagcctttgtggttaccgatccgggcatgaccagcatgcagcgccgccag
ttgctcaccgaagaagacttctacgccaaatacgaagaattcggcggcgacttcgaagcc
aaaatgggcgccgaaggcatccgtgatttgctgcgcggcttggacattgcccaagaagtg
gccactttgcgtcaagagctggatgccaccagctccgacaccaaaatcaaaaaaatcgcc
aaacgcctgaaagtgctggaagcgttccaacgctccggcatgaagctggaatggatgatt
atggacgtgctgccggtgttgccgccggatttgcgccccttggtgccgctggacggcggc
cgtttcgccacctccgatttgaacgacctctaccgccgcgtcatcaaccgcaacaaccgc
ttgaagcgtttgttggagctgcgtgcgcccgacatcatcgtgcgcaacgaaaaacgcatg
ttgcaagaagcggtggattccttgctcgacaatggccgtcgcggcaaagcgatgaccggt
gccaacaaacgcccgctcaaatcgctggccgacatgattaaaggtaaaggcggccgtttc
cgtcaaaacctgttgggtaaacgcgtagactactccggccgttcggtgattaccgtgggc
ccttacttgcgcctgcatcagtgcggcttgccgaaaaaaatggcgctggagctgttcaaa
ccgtttattttccacaagctggaagtgctgggcttggcctctaccgtcaaagccgccaaa
aaactggtggagcaggaagtggccgaggtgtgggatatcttggaagacgtgattcgcgaa
catccgattctgctcaatcgtgcgcccaccttgcaccgcttgggtattcaggcatttgag
ccgattttgattgaaggcaaggccatccaattgcaccccttggtgtgcgcggcctttaac
gccgacttcgacggtgaccaaatggcggtacacgtgccgctgagcttggaagcgcaaatg
gaagcccgcaccttgatgctggcttccaacaacgtgctgtcgcccgccaacggcgagccg
attatcgtgccgtcgcaggatatcgttttgggcttgtattacatgacccgcgacaaaatc
aacgccaagggcgaaggcagcctgtttgccgatgtgaaagaagtacaccgcgcctaccaa
acccgccaagttgagctgagcaccaaaatcaccgtgcgcctgcgcgaatgggtgaaaaac
gaccaagacgaattcgagccggtaatcaaccgctacgaaaccaccgtgggccgtgcgctg
ctgagcgaaatcctgcccaaaggcctgccgtttgaatacatcaacaaggcgctgaagaaa
aaagaaatctcacgcctgattaacgcgtctttccgcctgtgcggcttgcgcgatacggtg
atttttgccgaccatctgatgtataccggttttgcctactccacccgtggcggcatctcc
atttgcgtggacgacatggaagtgccggccaaaaaagccgaattgctggccgaagcgcag
cacgaagtgaaggaaatcgaagagcaataccgtcaaggtttggtgaccaacggcgagcgc
tacaacaaagtggtggacatctggggccgcaccggcgacaaaatcgccaaagcgatgatg
gataatctgtcgacccagaaaaccaccgatcgcgacggcaaagaagtggatcaagagtcg
ttcaactccatctacatgatggccgactccggcgcccgtggttcggccgcgcagatcaag
cagctttccggtatgcgtggtttgatggccaaaccggacggttcgattatcgaaacgccg
attacgtcgaacttccgcgaaggcctcacggtactgcaatactttatttccactcacggt
gcgcgtaaaggcttggctgataccgccttgaaaaccgccaactcaggttatttgacccgc
cgcttggtagacgtaacccaagacttggtggtggtggaagacgattgcggcaccaccgac
ggctttgtgatgaaagccgtggtgcagggcggtgatgtaatcgagcccttgcgcgaccgt
attttgggccgtgttaccgcggctgatgtggtagaccccagtaccggcgaaaccttggtg
gaaaccggcaccatgctcaacgaagccatggtggatatgattgacaactccggcatcgac
gaagtgaaagtgcgcacgccgattacctgtaaaacccgctacggcttgtgcgccaagtgt
tatggccgcgacctggcacgcggcaagctggtgaattcgggcgaatcggtgggggtgatt
gccgcccagtctatcggtgaaccgggcacccagctcaccatgcgtaccttccacatcggt
ggtgcggcatcgcgtgctgctgccgccagccaagtggaagccaagtccggcggcgtggtg
cgcttctccagccaaatgcgttatgtggccaacaacaagggcgagctggtggtgattggt
cgctcttctgaagtagtgattcacgacgacatcggccgcgagcgcgagcgccataaagtg
ccttacggtgccattttgctggtgaaagacggcgaaaccgttaaagccggccaaaccttg
gccacatgggatccgcatacccgcccgatgattaccgaacacgccggtcgtgtgcgcttt
gaaaacatcgaagaaggcgttaccgtggccaagcaaaccgacgatgtgaccggtttgtct
accttggtggtgatcgacggcaaacgccgcagcgctacccagtctaaactgttgcgcccc
ttggtgaaactgctggacgaaaacggcgaagaagtgaaaatgccgggtggtgatgcgccg
gtgtcgatggctttcccggtgggtgcggtgattaccgtgcgcgaagggcaggaaatcggc
aaaggtgatgtgttggcgcggattccgcaagcctcaaccaaaacccgcgacattaccggt
ggtctgccgcgcgtggccgagctgtttgaagcgcgtacgcccaaagatgccggtatgctg
gccgaagttaccggtaccgtatccttcggtaaagaaaccaaaggcaaacagcgcttggtg
attaccgatgtagacggcgtggcctacgaaaccctgatttcgaaagaaaaacaggtgctg
gtgcacgacggccaagtggtgaaccgtggcgaaaccattgttgacggctcggtagatccg
cacgacatcctgcgcttgcaaggcattgaagcgcttacccgctacatcgtgcaggaagtg
caagaggtttaccgcttgcaaggcgtgaagatttccgacaaacacatcgaagtgatcatc
cgccaaatgctgcgccgcgtgaacatcgccgactccggcgaaagccacttcattaccggc
gagcaagtggagcgtgccgatgtgatggccgccaacgaaaaactggaagccgaaggcaaa
gagccggtgcgttttgacaatatcctcttgggtatcaccaaagcctccctctctaccgac
agctttatctcggcggcgtccttccaagaaaccacccgcgtgctcaccgaagcggcgatt
atgggcaagaaagacgacctgcgcggcttgaaagaaaacgtgattgtgggccgcctgatt
ccggctggtaccggcttaacccaccaccgcacccgtcgccagcagtttgccgacgaaatg
cgtgcggctgccgaagtggccgcggaagagccgcaagcctaa
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