Paralysiella testudinis: JQU52_08340
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Entry
JQU52_08340 CDS
T07686
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ptes
Paralysiella testudinis
Pathway
ptes02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ptes00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
JQU52_08340 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptes03021
]
JQU52_08340 (rpoD)
Transcription machinery [BR:
ptes03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
JQU52_08340 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
GTP_EFTU
Motif
Other DBs
NCBI-ProteinID:
QRQ80766
UniProt:
A0A892ZGA0
LinkDB
All DBs
Position
complement(1595681..1597645)
Genome browser
AA seq
654 aa
AA seq
DB search
MANQNPKNTDIDTEQDDQDNNRPLTPEEQRARLRQLIILGKDRGYITYAEINDALPDDMS
DAEQIDNIVTMISGLGIQVTEVAPDAESLLMGDNTANMTDDDAVAEAEAALSSADNEFGR
TTDPVRMYMREMGQVDLLTREDEIIIAKKIENALRNMIQAISACPGSVAEILALVDRIRN
DEIKVDDVVEAIVDPAEELLDQLGIGVEAPAAEEAAQAEADDADSDDDADEVSDEESAAL
AASANLEELKQKTLSHFDGIQALYDQMVAVLQNKNSKDAQYLALRDNIAEELLQVRFSTR
QIESLCDKLRGRVDQIRRLERDIRDIALNRVHMDRDHFIASFLHNPTDLSWVENELAKNR
VWNEALARFQYAIIEKQTELADLEKAAQVSIEELKEINKNMVKSEQETNAAKQEMIQANL
RLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIA
DQARTIRIPVHMIETINKMNRISRQYLQETGEDPDSAKLAELMEMPEDKIRKIMKIAKEP
ISMETPIGDDDDSHLGDFIEDANNIAPADAAMYSSLREVTKDVLESLTPREAKVLRMRFG
IDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDRLKSFLDSEENKQ
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atggccaaccaaaacccgaaaaacaccgacatcgacaccgaacaagacgatcaagacaac
aaccgcccgctcacccccgaagaacagcgggcgcgtttgcgccagctgattatcctcggc
aaagaccgcggctacatcacctacgccgaaatcaacgatgccctgcccgatgatatgtcg
gacgccgagcaaatcgacaacatcgtcaccatgatttccggcctcggcattcaggttacc
gaagtagcgcccgatgccgaaagcctactgatgggcgacaacaccgccaacatgaccgac
gacgacgccgtggccgaagccgaagccgcgctctctagcgccgacaacgaattcggccgt
accaccgaccccgtgcgtatgtatatgcgcgaaatgggccaagtggatctgctcacccgc
gaagatgaaatcatcatcgccaaaaaaatcgaaaatgccctgcgcaacatgattcaggcc
atttccgcctgccccggctccgtggccgaaattttggccttggtcgaccgcatccgcaat
gatgaaatcaaagtagacgacgtggttgaagccattgttgaccctgccgaagagctgctc
gaccaattgggcatcggcgtggaagccccagctgccgaagaagccgcacaagccgaggcc
gacgatgccgacagcgacgacgatgccgatgaagtgagtgacgaagaaagcgccgcccta
gccgcctctgccaatttggaagaattgaaacaaaaaaccctcagccatttcgacggcatc
caagccttgtacgaccaaatggtggcggtattgcaaaacaaaaacagcaaagatgcccaa
tacctagccttgcgtgacaacatcgccgaagagctgctgcaagtacgtttctccacccgc
caaatcgaaagcctgtgcgacaaactgcgtggccgtgtcgaccaaatccgccgcctggag
cgcgatatccgcgacatcgccttaaaccgcgtacacatggatcgcgaccactttatcgcc
agcttcctgcacaaccccaccgatttaagctgggtggaaaacgaattggccaaaaaccgc
gtttggaacgaagcactggcccgcttccaatacgccatcatcgaaaaacaaaccgagctg
gccgatttggaaaaagccgcacaagtgtcgatcgaagagttgaaagaaatcaacaaaaac
atggtcaaaagcgagcaggaaaccaatgccgccaaacaagaaatgattcaggccaacttg
cgcttggtgatttcgattgccaaaaaatacaccaaccgcggcctgcaatttttggatttg
attcaagaaggcaatatcggcctgatgaaagcagtggataaatttgaataccgtcgcggc
tacaaattttccacctacgccacttggtggatacgccaggccatcacccgctccatcgcc
gaccaagcgcgcaccatccgcattccggtgcacatgattgaaaccatcaacaaaatgaac
cgcatttcacgccaatacctgcaagaaaccggcgaagatccggattctgccaaactggcc
gaattgatggaaatgccggaagacaaaatccgcaaaatcatgaaaatcgccaaagagccg
atttcgatggaaacccccatcggcgacgacgacgacagccacttgggcgactttatcgaa
gacgccaacaacatcgcccccgccgatgcggccatgtactccagcctgcgcgaagtcacc
aaagacgtactcgaaagcctcaccccgcgcgaggccaaggtattgcgcatgcgctttggc
atcgacatgaacaccgaccacaccctggaagaagtgggcaagcaattcgacgttacccgc
gagcgcatccgccaaatcgaagccaaagccctgcgtaaactgcgccacccctcgcgcagc
gaccgcctgaaaagcttcctcgatagcgaagaaaacaagcaatag
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