Puntigrus tetrazona (Sumatra barb): 122323057
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Entry
122323057 CDS
T08985
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122323057 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptet03019
]
122323057 (edc4)
Messenger RNA biogenesis [BR:
ptet03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122323057 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
122323057 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
Beta-prop_EDC4L
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_Prp19
Pdc1_Ge1
WDR55
Uteroglobin
Motif
Other DBs
NCBI-GeneID:
122323057
NCBI-ProteinID:
XP_043072631
LinkDB
All DBs
Position
18:3698246..3719162
Genome browser
AA seq
1415 aa
AA seq
DB search
MASGSNMDIEGATQHLRDILKLDRPGNSAEPLVESQRKPSFNGELNGVLGADLIGAGGLA
TMVEPAAHNSDKLNGQDTQTICLSGDDGSTCVPIRANNVEIVSSRDSSIDSKARGSNKVK
IQPVAKYDWEHKYYYGNLIAVSNSYLAYAIRGANNHSMIRVLRLGSTERSLLKGFTGAVT
DLAFAHLDSTLLGCVDEAGNMFIWQLTSHSSKIQDEVIVHIRRPEDTPLNSNRRLIWCPF
IPEDNDESPEDACQTLALLHEDRAEVWDLDILRSNNSSWPVDATELKEGFITIRGHTARI
SEGALSPDGTVLATASHDGFVKFWQIYIEGQDQPSYDEHKRLLSKTQNLTDSKPTKRCLH
EWQPHNGRPLSCLLFCDNHKKQDPEVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSP
DPFNSSVLPSLKASLDLSAEFLILSDVQRKVLYVMELLQDQEKGRASFTAVSEFLLTHPV
LSFGVQDVARARLRHTEVLPPDEESESMTTEGNQGPSESKSGIQIKLYCVHTKSLQDVQI
WFQPNQGASSSLFMPQSGSPGSQDGFGFSDPLADLNVEAMSSDKESGDSGSQNDLSKILA
LPTPADFMSPAPSALPKLMTPDAFMTPSTSMPASPGSSASSLTIVTAMSSSDSGARGGDD
LAQSPKMSVECGNSSLTLNASSSSPRSNSILISGLGENIQVSPPNPPLSLDLQAIDPMVV
PQASPTRARSPDVISSASTAMSQDIPEIASETLQRGLASAAADSGPVLHSDSMASAASVL
HLLSPRARSSAEHSLLPLELGAASVDGEQRLNTTPSLLETALSQENAAAAGGSCSDSSVN
HTWPAAPDITRETRNSLRDNGLGDCSREEIKDRHISSPYHRRTYHLTQNDSQDASAEQSD
HDDEVASLASSSGNCGPRSSHRLPVKDWKTSPRSSPKLKRKSKKDEGECSQSRQIENQMS
TEVQDELLQMLRSQQREIAELRQNQLDLLQRVTSHMDAVQSSIMAHIEHAMLAQQEQEQR
RMERILAEGQSRNQQLQDQLVQQLVQTLNNSLCNRLDKVLREEMKKTVPQAISKSLDPMT
GQMSSTIAAKLTAVEGTLKENVTKVVKSKNTTDAIGRAAAEAMQGPIQAAYKETFQSIVL
PVFERGCQSMFQQINDSFKQGTNEYIQQLETHIKNRKQRDQDARDPVIGQLQQMIDTLQN
SQDQLATTVTASVCSDVQHQLHMIVGNLQDSILTQVQRIVKGEVSLAMKEQQAAVTSSIM
QAMRSAAGTPVPSAHLDYQAQQASILQLLQQGQLNEAFQQALSAADLNLVLYVCETIDSQ
QVFGQQPCPLHQAVLLSLIQQLSTNLSTRTELKISYLEDAVMNLDHGDPVTRDHMSAVLS
QVRQKLLHFLQQDAHSPLSKRARRLMMMLQGLVSH
NT seq
4248 nt
NT seq
+upstream
nt +downstream
nt
atggcttctggttccaacatggacatagagggcgcgacccagcaccttcgggacatcttg
aaactggatcgtcccggtaattcggccgagcctttggtagagagccagagaaaaccttct
tttaatggagagttgaatggcgttcttggagcggatcttattggagcaggaggacttgca
acaatggtggagccagctgctcacaactcagacaaacttaacggacaggacacacagact
atctgcctttcaggagatgatgggtccacttgtgtccccatcagagcaaacaatgttgaa
atcgtgtccagtcgtgactctagtattgacagtaaggctcgtggcagcaacaaggttaaa
attcagcccgtggccaaatatgactgggagcacaagtactactatggcaatttaatagct
gtgtccaactcgtacttggcttatgccatccgaggtgcaaacaatcattctatgatccga
gtgctgcggctgggatcaactgagcgttcgctgctgaagggcttcaccggtgccgtcaca
gaccttgctttcgcccacttggactccacccttttgggttgcgtggatgaggctggaaat
atgttcatttggcaactcactagccacagcagcaaaatacaagatgaagtgatcgttcac
atccgaaggccagaggacactccactaaattccaaccgcagactcatctggtgtcccttc
atcccggaggacaatgatgagagtccagaggatgcgtgtcagacactggcactccttcat
gaagacagagctgaggtttgggacctagacatcctccgatccaataacagctcatggcct
gtggatgccacagaactgaaagagggcttcatcaccattagaggacacacagcacgcatt
agtgagggagctctgtcccctgacggcacggtcttggccacagccagtcatgatggattt
gtaaagttctggcaaatttacattgaaggacaggaccaacccagctatgatgagcataag
agacttctttcaaaaacacaaaatcttaccgactccaaaccaaccaaacgatgcctgcat
gaatggcagccacataatggtcggcctctttcctgtctgctcttttgtgacaaccacaag
aagcaagacccagaagttcctttctggcgcttcctgatcactggagctgatcagaaccag
gaacttaagatgtggtgcacagtgtcgtggacatgcttacaaactatcaggttttcccca
gatccatttaacagcagtgttctacccagcctgaaggctagtttggacctttctgcagaa
tttctcatcctcagtgatgttcagaggaaggtgttgtacgtcatggagctgttacaggat
caggaaaaaggccgcgctagcttcactgcagtttcagagtttctgcttacgcaccctgtg
ctaagcttcggcgtgcaggatgttgctcgcgccagactgcgccacacagaggtccttccc
cctgatgaagaaagtgaaagcatgacgacagaaggaaaccagggaccctctgagtccaaa
tcaggaatccagattaaactctactgtgttcatacaaaatcactacaggatgtgcagatc
tggttccagcccaatcagggagcctcatcctccctctttatgccacagtctggatcacct
ggatcacaggatggctttggtttttctgacccacttgctgatctgaatgtggaggcaatg
agctctgataaagagtctggagatagtggatcacagaatgacctgagtaagattctggct
cttccaactccagctgacttcatgagtccagccccatcagccttgcccaaactcatgacc
ccagatgccttcatgacgcccagcacctccatgcctgcttctcctggcagcagtgccagc
agcctgaccatagtcactgctatgagcagctcagacagcggtgcaagaggtggagatgat
ctggcccagagccctaaaatgtctgttgaatgtggaaacagcagcttgactctgaatgcc
agctcaagcagtccgagatccaactctattctcatctcaggccttggggaaaatatccag
gtttcccctccaaaccctcctctctccctggatctccaggccatagaccctatggttgtc
ccccaggcctcaccgacgagagctcgctctccagatgtcatctcctctgcttctacggca
atgtcccaggacatccccgagatcgcctctgagaccctgcagagggggctggccagcgcc
gctgctgactcaggccctgtcctacattctgacagcatggcatcagccgcatcagtcctc
cacctgttgtctccgagagcccggagcagtgctgagcacagtttgctgcctctggaattg
ggtgcagcatctgtggatggagaacagagacttaataccacaccctccttgctggagacg
gctctgtcgcaggagaacgcagcagcagccggaggatcctgttccgacagcagcgtgaac
cacacctggcccgcagcgcctgatatcacacgagaaactcgcaacagcctgagagacaat
ggtttgggagactgctctagggaggaaataaaggacagacacatttcttctccataccac
aggcgcacatatcacctgactcagaatgacagtcaggatgcaagtgcagagcagagcgat
catgatgatgaggtcgctagtctggcctcctcctcaggaaattgtggccctcgctcttct
cacagacttcctgtgaaagactggaaaacatctccccgcagctcccctaagctcaagagg
aagagcaagaaggatgaaggagagtgctcgcagtctagacagattgaaaaccagatgagc
acagaggtgcaggacgagctcctacagatgttaaggagtcagcaaagggagatcgctgag
ctgagacagaaccagctggatcttctgcagagagtcaccagccacatggacgctgttcag
agctccatcatggctcacattgagcacgccatgttggctcagcaggagcaagaacagaga
agaatggagagaattttggctgaaggacaaagccggaaccaacagctccaggaccagctg
gttcaacagctcgtccagactctgaacaacagtctctgcaacaggctagacaaagtttta
cgtgaagaaatgaagaagaccgtcccacaggccatatcgaagagtctagaccctatgact
ggccagatgagcagcaccatcgctgccaaattaaccgcagtggaaggaacactgaaagag
aatgtcaccaaagttgttaaatccaagaacactacagatgctatcggtcgcgctgctgca
gaggccatgcagggccccatccaggcggcctacaaagagaccttccagagcattgtgctg
cccgtgtttgagagaggctgccagtccatgtttcagcagatcaatgacagcttcaaacag
ggaaccaacgagtacatccagcagctggagacacacatcaagaacaggaaacagcgggac
caggatgcacgggatcccgtcattggccagctgcaacagatgattgacactctccagaat
tctcaagaccagctggccactactgtgacggccagcgtgtgctctgacgttcagcatcag
ctccacatgatcgtgggaaatctgcaggactcaatcctgacacaggtgcagcgcatagtg
aagggagaggtgagtctggccatgaaggagcagcaggcagctgtcacctccagcatcatg
caggccatgcgctcagccgcaggaacacctgtaccctctgcacatctggactaccaggcc
cagcaggccagcatactgcagttactgcagcagggccaacttaatgaggccttccaacag
gctttatctgcagcagacttgaatctggtgctctacgtgtgtgagaccattgactcccag
caagtgttcggccagcagccctgtccactccatcaggccgtccttctgtctctcatccag
cagctctccaccaacctgagcacacgcacagaactcaagatcagctatcttgaagatgct
gtaatgaacctggaccacggagatccggtcaccagagaccacatgtctgcagtgctgtcc
caggtacgacagaagctcttacacttcctgcagcaggatgcccacagccctctgagcaag
cgtgctcggcgcctcatgatgatgctgcagggcctggtcagtcactag
DBGET
integrated database retrieval system
