Puntigrus tetrazona (Sumatra barb): 122323316
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Entry
122323316 CDS
T08985
Symbol
smarcc1b
Name
(RefSeq) LOW QUALITY PROTEIN: SWI/SNF complex subunit SMARCC1b
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122323316 (smarcc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptet03021
]
122323316 (smarcc1b)
03036 Chromosome and associated proteins [BR:
ptet03036
]
122323316 (smarcc1b)
Transcription machinery [BR:
ptet03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122323316 (smarcc1b)
Chromosome and associated proteins [BR:
ptet03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
122323316 (smarcc1b)
PBAF complex
122323316 (smarcc1b)
GBAF(ncBAF) complex
122323316 (smarcc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM
SWIRM-assoc_1
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
DUF1635
DUF919
Motif
Other DBs
NCBI-GeneID:
122323316
NCBI-ProteinID:
XP_043072998
LinkDB
All DBs
Position
19:complement(15578624..15587712)
Genome browser
AA seq
962 aa
AA seq
DB search
MATQAPGSAAGPTMSQAGCSSSLSRRMDGGPCCKFWESPEIISQLETHVQSDAPSSKSLS
GLVIQLLQFQEDSFGRRANNPSFTKLPAKCFQDLRPGGALCYILGSVYKYKSEQGWRRFD
LQNPSRMDRNVEMFISVEKTLTQNNLLSRPVVHLSPDLEQKQALKLKDIVVRHQGTVTEE
KSQATHQIYPSPSTSDEEEWLRPVMRLDRQVMVHWGMCPDSYDSLISASDVDEEVEEPPN
ADRCWKVHPKWVLDTDIYNEWMNEEDYEVDENGNSMSFRRRIYQSTEEQKPVKKRRRFPS
PPSSESKKKGGKKSSGVYKRRGQPEEAEPEEDLTKDMEDPTPVPNMEEVILPKNVNLKKD
SENTPVKGGIMADLDDQEEDLLSGVRDEEEQREFSRGMEGEESATEQTHHIIVPTYASWF
DYNCIHQIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGD
VCALIRVHSFLEQWGLINYQVDAESRPLPMGPPPTPHFNVLTDTPSGLVPLQHRPLQVSA
SQHMLHFPEKLREKPSDLQNFGLRTDIYAKKHPKSKGASAGREWTEQETLLLLEALEMYK
DDWNKVSEHVGSRTQDDCILHFLRLPIEDPYLENSEASMGPLAYQPVPFSQSGNPVMSTV
AFLASVVDPRVASAAAKAALEEFARAREEAPPEIFSASFHRTQRLGHHLDPAFTLQTGSI
AGLDPDSSEKTDGSVIETMNAEYEQHDKLEGDSILGEGERVKNEEKEESEGERGEESTAE
ESFDMGLSQGDGEEMKRRVELEVVEGNITTAAAAALASAATKAKHLAAVEERKIKSLVAL
LVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLSERQNFHLEQVKYAEMKARQTV
EQQQQTGATQSSSSSTAYNPLHHGRSVSSAATGQVIGARHSGAPNGMYQTPPSSQADGGT
PM
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atggctacacaagcgccaggctctgctgctggacctacgatgagtcaagccggttgtagc
tcttcgctgagtcgaagaatggacggtgggccgtgctgcaaattctgggaaagcccggaa
ataatctctcagttggagacgcatgtacaatctgatgctccctccagcaagtctctgtct
gggctggtcatccaactgctgcagtttcaggaagattcgtttggccgtcgagcaaataac
ccaagctttacaaaactcccagcaaagtgttttcaggacctaaggccgggcggtgctctc
tgctatattctaggatcagtgtacaagtacaagtcagaacagggctggagacgctttgat
cttcagaacccgtcaagaatggatcgcaatgtggagatgttcatatctgtggagaaaaca
ctgacacagaataacttattgagcagacctgtggtgcacttgtctcctgatcttgagcag
aagcaagctcttaaactcaaagacattgttgtgcgacaccagggcacagtaacagaggag
aagtcacaagccacccatcaaatatacccatccccctccacatcagacgaagaagagtgg
cttagaccagtcatgcgattggatcggcaagtgatggtgcattggggcatgtgtccagac
agttacgactcgcttatatcagcaagtgatgtagatgaagaagtagaggaacctcccaac
gcagacaggtgctggaaggttcatcccaagtgggttctcgacacagacatatataatgag
tggatgaatgaggaagattatgaagtcgatgagaatgggaatagtatgagtttcaggcgg
cgtatctaccaaagcacagaggaacagaaacctgtaaagaagcggcgacgcttcccgtct
ccaccttcttctgagtctaagaagaaaggaggaaagaaaagctcaggtgtgtataagagg
cgtggtcaaccggaggaagcggagccagaggaggacctcactaaagacatggaagatccc
acgcctgtccctaacatggaggaggtcattctgcctaaaaatgtgaacctaaaaaaagac
agtgaaaacactccagtcaaaggaggcattatggctgatttagatgaccaggaagaggac
ctgctttccggtgtcagagatgaagaggagcagagggagttcagccgtgggatggagggg
gaggagagtgccacagagcaaacgcatcacatcattgtgcccacctatgcctcctggttc
gactacaactgtattcatcagatagagagacgagctctgcctgagttcttcaatgggaaa
aataagtccaaaacaccagaaatatatcttgcataccgcaacttcatgattgatacatac
cgactaaaccctcaggagtatctgacctcaacctcctgtagacgaaacctgacaggagat
gtgtgtgcacttataagggttcattcatttttggagcagtgggggttgatcaactaccag
gtagacgcagaaagtcgaccccttcccatgggcccacccccaacaccacactttaatgtt
ctcacagacacaccatctggactcgtcccattacagcacagacccttacaggtttccgct
tctcagcatatgttgcatttcccagagaaattgagagaaaaaccatctgacctgcagaac
tttggtctgcgaactgatatttatgctaaaaaacatccaaagagtaaaggcgcaagtgca
gggagagaatggacagaacaggaaacactcttacttttggaggctttagagatgtataaa
gatgactggaataaggtttcagagcatgtgggcagtcgcacacaagacgactgtattctt
catttcttacggttgcccatagaggacccatacctagagaactctgaagcctcaatgggt
cctctggcctatcagcctgtccctttcagccagtcggggaaccccgtaatgagcactgtt
gcgttccttgcatctgtggttgaccctcgagtggcctctgcggccgccaaagcagcttta
gaggaattcgcaagagcaagagaagaggccccgccagagatattcagtgccagctttcac
agaacacagagacttgggcatcatctagatccagcctttacactccaaacgggcagcatt
gcaggacttgatcccgacagttcggaaaagaccgatgggagtgttatagaaacaatgaat
gctgaatatgagcagcatgacaagcttgagggtgacagcatcttgggagagggagagcgc
gtgaagaacgaggagaaagaagagagcgaaggagagaggggagaggagagcacagcagag
gagagttttgacatgggcctcagccaaggagatggggaggagatgaagaggagggtggag
cttgaggtggtggagggaaacatcaccacagctgctgctgcagcactggcctccgcagct
accaaagcaaagcacttggctgcagtagaagaaaggaaaatcaaatctctggtggctctg
ctggttgagactcagatgaaaaagctggagatcaaactgagacactttgaagagctggag
accattatggatcgagaaaaagaggctctggagcagcagaggcagcagttattgtcggag
aggcagaacttccacctggagcaggtgaaatatgccgagatgaaggcacgacagaccgtg
gaacagcagcaacaaacaggagctacacagagcagcagcagcagcacagcgtacaaccct
cttcaccacgggcgttcggtgagcagtgctgctacaggacaggtcataggtgctcggcac
tctggagctcctaatggcatgtaccaaactccaccgtcctcacaggccgatgggggcaca
cccatgtaa
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