Puntigrus tetrazona (Sumatra barb): 122323601
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Entry
122323601 CDS
T08985
Symbol
ddx39b
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03013
Nucleocytoplasmic transport
ptet03015
mRNA surveillance pathway
ptet03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122323601 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
122323601 (ddx39b)
03015 mRNA surveillance pathway
122323601 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptet03019
]
122323601 (ddx39b)
03041 Spliceosome [BR:
ptet03041
]
122323601 (ddx39b)
Enzymes [BR:
ptet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122323601 (ddx39b)
Messenger RNA biogenesis [BR:
ptet03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
122323601 (ddx39b)
Spliceosome [BR:
ptet03041
]
Complex C
Other components
EJC/TREX
122323601 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
122323601 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
122323601
NCBI-ProteinID:
XP_043073493
LinkDB
All DBs
Position
19:6649299..6659826
Genome browser
AA seq
435 aa
AA seq
DB search
MTENDVENELLDYEEDEVDAGGVGDTALGHNDGGISIRKEGVKGSYVSIHSSGFRDFLLK
PELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQ
VSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKRESPHVVVGTP
GRILALSRNKSLNLRHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSK
EIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIF
VKSVQRCIALAQLLVEQNFPAIAIHRAMPQDERLARYQQFKDFQRRILVATNLFGRGMDI
ERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDETDARTLNDVQDRFEVNISE
LPEEIDISSYIEQTR
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgacggagaacgacgttgagaacgagctgttggactatgaggaggatgaggttgatgcg
ggtggtgtcggggacacagcccttggacacaacgatggcgggatatccatcagaaaagaa
ggggtcaaagggtcgtacgtgtccatccactcctcgggattcagggatttcctcctcaaa
ccagaactgctgagagctatagtggactgcggctttgaacatccatctgaagttcagcat
gaatgcattcctcaggcgatcctggggatggatgtattatgtcaggccaaatctggaatg
gggaagaccgccgtctttgtgctggccacccttcagcagctggagccagtgaccgggcag
gtttcagtgttggtgatgtgtcacacccgagagctggccttccagatcagcaaagagtac
gagcgcttctccaaatacatgcccagcgtcaaggtggcagtgttctttggtggtttatct
ataaagaaggatgaggaggttctgaagagagagagccctcacgtggtggtggggactcct
ggacgtattctagctctgtctcgcaacaagagtcttaacctacgccacatcaagcacttc
atcctggacgaatgcgacaagatgctggagcagcttgacatgcggcgtgatgtccaggag
atctttcgcatgacccctcacgagaagcaggtcatgatgttcagtgccaccctgagcaaa
gagattcgtcccgtctgcagaaagttcatgcaagatccgatggaaatttttgtggacgac
gagaccaagctgacgcttcacggcctccagcagtactacgtcaagctgaaggacaacgag
aagaacaggaagctctttgacctcctggatgtgttggagttcaatcaggtggtgatcttc
gtcaagtccgtgcagcgttgtattgctctggctcagttgctggtggagcaaaatttccct
gccatcgccattcatagagcaatgcctcaagacgaaagattagctcgatatcagcagttc
aaggatttccagagacggatcctggtggccacaaacctgttcggccgaggtatggacatc
gaaagagtcaacatcgccttcaactacgacatgcctgaagattcagacacgtacctgcac
agggttgctagagccggcaggtttggaacgaaaggtctggccatcacttttgtgtcagat
gagactgacgcccgcacgttgaacgatgttcaggacaggtttgaggtgaacatcagcgaa
cttccagaggagattgacatctcttcatatattgaacaaacgcgataa
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