Puntigrus tetrazona (Sumatra barb): 122323911
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Entry
122323911 CDS
T08985
Symbol
skiv2l
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122323911 (skiv2l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptet03019
]
122323911 (skiv2l)
Enzymes [BR:
ptet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122323911 (skiv2l)
Messenger RNA biogenesis [BR:
ptet03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122323911 (skiv2l)
mRNA degradation factors
3'-5' decay
Ski complex
122323911 (skiv2l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
Helicase_C
DEXQc_Suv3
MTR4-like_stalk
ResIII
DUF3516
HTH_23
Motif
Other DBs
NCBI-GeneID:
122323911
NCBI-ProteinID:
XP_043073963
LinkDB
All DBs
Position
19:complement(6456092..6473551)
Genome browser
AA seq
1247 aa
AA seq
DB search
MDKTDLPPRGPDDLPLSLLEMGCSGRFELITHPLPKNRPLPPHSTLPHGLPPTCLDLKTE
VEKRFLRDPAWLPVHDVDDAFQKFLKISTRDTEVDSLLHCSLSPLHSGLSVVRDPTTGML
LDFTEVLLEDTGLSAKNSLSLQRQPGPPSESLRGSNTNYPFLPAGMEELTLEQIKKKSEL
EEDVDFEKDLLTVPPGLKAGMDFSDKEAKTTRSEVNLLSLLSTFDNVIDAFPEEKEGVSR
KEETAKLPRTNSLEDLGIKDSGSSPSQPPANTLSPTEQTKKPQGDNKKWAVPVDITSPCD
DFYKRIPDPAFKYPFELDLFQKQAVLRLEAHDSVFVAAHTSAGKTVVAEYAIALSQKHMT
RTIYTSPIKALSNQKFRDFKNTFGDVGLLTGDVQLSPESSCLIMTTEILRSMLYNGSEVI
RDLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNAVEFSEWIGRIKKRP
IYVISTVKRPVPLEHYLYTGNSTKTQKELFLLLDSTGNFLTKGYYAAVEAKKERTSKHAQ
SFGTKNVSQHNTTASQDRAVWQTLLNYLSQRQQTPVVAFTFSRTRCDENARSLTSLDLTS
SIEKSEIHSFLQKSLTRLRGGDRQLPQILLMRDLLKRGIGVHHSGILPILKEIIEMLFSR
GLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLDATG
TVIILCKAGVHDMGDLHSMMLGKPTVLQSQFRLTYTMILNLLRVEALRVTDMMRRSFSEN
HRDTQAHEKRISELRNTVSSLPPLDTEGQLSDILSYYHTITELRITTETLQRAVLESVNG
LKALSVGRVVIANNGQHHNALGVILQVSSDAVNRTFTALIICEKGNEEAVGDDRSNKALH
PIYSTSLFIPEGPCSHTVQKLKLQDISAITSKTLKVIPERIIDNYNKRQQPRFRLDPPGQ
AISTATQELLRLAEANPTSIATLDPVNDLHLKGVDVVEGVMRQRVLQDCLKDFHCIHSPT
FTEQFARVQERMSVQEELDKLLFLVSDQSLTLLPEYHQRIKVLEALQYVDGTGAVQLKGR
VACQISSHELLLTELLFENTLSPLAPEESAALLSCLVFTQNTQIDPHITNTLQEGINQVL
SVAQRIGELQRDCGIAQTAEDFVAQFKFGLTEVVYCWARGMPFSEIAQLTDVQEGTIVRC
IQRLDEVLKEVRQAARIVGDSVLGSKMERASLAIRRDIVFTASLYTH
NT seq
3744 nt
NT seq
+upstream
nt +downstream
nt
atggacaaaacagatctgcccccaaggggtcctgatgatttgcccctgtctctcctggag
atgggctgctcggggagatttgagctcatcacacacccactgcccaaaaacagacccctg
cctccacacagcacgcttccccatggcctccctcctacgtgtctggatctaaaaacagag
gtagaaaagcgttttctccgagaccccgcttggctcccggtacacgatgtagacgatgcc
ttccagaagttcctcaagataagtacgcgagacacagaggtggactcactcctgcactgc
tcgctgtctccactgcactctggtctgtctgtggtcagagatcccaccaccggtatgctg
ctggacttcactgaggtgttattagaggacacaggtttgtctgccaaaaattctctgtca
ttacaaagacagcctggacctccatcagagagcctgagagggagcaacacaaactaccca
ttcttgccagccggcatggaagaactgacgttagaacagatcaagaaaaagtcagagctg
gaagaagacgtagattttgagaaagacttgttgacggttcctcctgggctgaaggctggg
atggacttcagtgacaaagaagccaaaaccacgaggagcgaggtgaacctgctgtctctc
ctgtcgacctttgacaatgtcattgacgcttttcctgaggagaaagagggagtctcacga
aaagaggagactgctaaacttcccagaactaacagcctggaggacctgggaatcaaagat
tcaggcagctctccttctcagcctccggccaacactttaagtccgactgaacaaacaaag
aaaccgcagggggacaataaaaaatgggccgttcctgtggacatcacctcaccgtgtgat
gacttctacaagcgtatccctgacccggccttcaagtatcccttcgagctggacttgttt
cagaagcaggctgtcctccgactcgaagctcatgactctgtgttcgtcgcggctcacaca
tcagctggcaagaccgtggtggctgaatacgcaattgcgctttcccagaaacacatgacc
aggaccatttacacgtcccccattaaggccttgtccaatcagaagttcagagacttcaag
aacacgttcggtgacgtgggccttttgaccggagacgtccagctgagccccgagtcctcg
tgtctcatcatgaccactgagatcttgagatctatgctctataacggctccgaggtcatc
cgggatctggaatgggtcatttttgatgaggttcactacatcaatgatgcagagagggga
gtggtgtgggaggaagtgctcatcatgttgccggagcacgttagcatcatcctgctgagt
gccacggtgccaaacgcagtggagttcagtgaatggatcgggcgtatcaagaagaggccc
atctatgtgattagcacagttaaaaggcctgttcctctagagcactatctgtatactggc
aacagcaccaagactcagaaagagctcttcctgttgctggactccaccggaaacttcctc
actaaaggctactacgccgcagtagaagccaagaaggaacgcacaagtaaacatgctcag
tctttcggcacgaagaacgtatcgcagcacaacacgacagccagtcaagatcgagccgtt
tggcagaccctgctgaactacctgtctcagaggcagcagactccagtggtggccttcacc
ttctctcggacgcgctgtgatgaaaacgcccgctctttgacctctctggacctcaccagc
tccatagagaagagcgagatccactccttcctgcagaagagcctgaccaggctgagagga
ggcgaccgacagttaccgcagatcctgttgatgcgtgatttgctgaagagaggtattggt
gttcatcacagcggcatcctgccaatcctgaaggagatcatcgagatgctcttctccaga
ggtttagtgaaggtgctgtttgctacggagacgtttgccatgggtgtgaacatgcctgcc
aggaccgtggtgttcgacagcatccgcaaacacgacggcacgggattcagaaacctgctg
cccggtgagtacattcagatggcgggccgtgcaggcagaagaggtttggacgctacaggg
accgttatcatcctctgtaaggctggagttcatgatatgggagacctccactctatgatg
ctggggaagccgacagtgctgcagtctcagttcagactgacctacaccatgatcctcaat
ctgctgcgtgtggaggccctgagggtcaccgacatgatgaggaggagcttttctgagaac
cacagggatacgcaggctcacgagaagagaataagtgaactgagaaacacggtctcctct
ctccctccgctggacacggagggccagttatctgatatactgtcatattaccataccatc
acagagctgcgcatcaccacagagaccctgcagcgagcagtgctggagtcagtgaatgga
ctcaaagctctgtctgttgggagggtggtaatagcgaacaacggccagcatcacaacgcc
ctgggagtcatcctacaggtgtccagtgatgcagtaaatcgcacgttcaccgctctcatt
atctgtgagaagggtaatgaagaggcggtgggtgatgatcggtctaataaagccttacat
cccatttacagcacctcactgtttattccagaaggaccctgcagtcatacggtgcagaaa
ctcaagttgcaggacatctctgccatcacaagcaaaaccctgaaggtcattccagagagg
atcatcgacaactacaataaaagacagcagccacgcttcagacttgatccaccgggtcag
gctatttcgacagctactcaggagctcctgcgactggctgaggccaatcccacgagcatt
gcgacccttgaccctgtgaatgacctgcacctgaagggcgtggatgtggtggagggagtg
atgaggcagcgggtgttacaggactgtctcaaagacttccactgcatccactcgcccacc
ttcactgaacagtttgcgcgcgtgcaggagaggatgagtgtgcaggaagagctggacaag
cttctgttcctggtgtcagatcagtcattgactctgctgcctgagtaccatcagagaatc
aaggtgctggaagcgcttcagtatgtggacggcactggagcggtgcagctgaagggtcgt
gtggcctgtcagatcagcagtcatgagctgctgctgactgaactcctgtttgagaacacg
ctgagtcctctcgcccccgaggagagcgccgccctgctgtcctgcctcgtcttcacgcaa
aacacccagatagacccacacatcaccaacacgctacaggagggcatcaatcaagtgctc
agtgtggcccagcgtatcggtgagctgcagagggattgtgggatagctcagacggctgaa
gactttgtggcccagttcaagtttggcctgactgaggttgtatactgctgggcaagaggc
atgccgttttctgagatcgcccagctgacggacgtgcaggaggggacgatcgtacgctgc
atccagaggctggatgaggtcctgaaggaagtgagacaggccgctcgtatagtgggcgac
tcggtcctgggcagcaagatggaaagggcctctctggccatacgcagagacattgtgttc
accgcctcgctctacacgcactga
DBGET
integrated database retrieval system
