Puntigrus tetrazona (Sumatra barb): 122324713
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Entry
122324713 CDS
T08985
Symbol
vps18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet04140
Autophagy - animal
ptet04148
Efferocytosis
ptet05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
122324713 (vps18)
04148 Efferocytosis
122324713 (vps18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
122324713 (vps18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ptet04131
]
122324713 (vps18)
Membrane trafficking [BR:
ptet04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
122324713 (vps18)
Hops complex
122324713 (vps18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_RING_C
Clathrin
Lact-deh-memb
zf-RING_Vps41
zf-C3HC4_2
zf-RING_16
zf-RING_11
zf-ANAPC11
DUF1664
zf_RING_Vps8
zf-rbx1
zf-RING_5
DUF5600
KH_PARP14_8
KNOX2
zf-C3H2C3
DUF2175
STX17_N
zf_RING_Vps8_fungal
zf-RING_UBOX
DUF4446
Apolipoprotein
LETM1_C
zf-C4H2
Motif
Other DBs
NCBI-GeneID:
122324713
NCBI-ProteinID:
XP_043075272
LinkDB
All DBs
Position
20:complement(14778676..14784182)
Genome browser
AA seq
975 aa
AA seq
DB search
MASILDQYEDSQNIRQHSRVSAANIGITHSGFVNVRLEEEKPIFNKQRIDFSPPEKINHL
SVCNNQLCMSLGKDTLLRIDLGKPDQPNQIELGRKDDSKVHKLFLDPTGSHLVICLTTNE
CVYLNRNTQKVRSLSRWRGHLIESIGWNKLIGSETNTGPILVGTSQGIIFEAEISASEAT
LFNTNPDQYFRQVHSLEEDGKPAPVCCLEVERGLESKYFIVATTRKRLFQFVGKLAEGSE
QQGFSSIFAQNQDLLPSFQEFPVNMGYSEITFYTSKLRSSPKTFAWMMGNGVLYGQLDYV
RPDSLLSDVQVWEYTSDIDLNSVKPISIVLTQFHFLLLLPDRVKSICTLNGQVVHEEKFF
PEKFGCLKKMIKDPITGLVWIYTEKAVFRYHIQREARDVWQMYMNMNKFDLAKEYCKDRP
ECLDMVLAKEAEHCFQNKRYLESAKCYALTQNYFEEIALKFIEAKQEEALKEFLIKKLTN
LKLTEKTQITLLVTWLTELYLNRLGQLETDDGKQHLFLETREEFRTFLKSPKHKDCFYNN
RNTIYDLLASHGDVDNMVYFSVIMQDYERVISHYCQHDDYSAALDVLSKHCNDKLFYKFS
PVLMQHIPKKVVDAWIQMGNRLDPKNLIPALVNYSQMGSMQQINETIRYMEFCVYELDVK
DEAIHNYLLSLYAKHKPDALLQYLKQAGTHVSDIHYDLKYALRLCAEHGYLQACVLVYKI
MELYEEAVDLALQVDVDLAKSCADLPEDDEELRKKLWLKIARHVVQEEKDVKKAMNCLSS
CNLLKIEDILPFFPDFVTIDHFKEAICNSLEEYNQHIEELKQEMEEATESAKRIREDIQE
MRNKYGVVESQEKCATCDFPLLNRPFYLFLCGHMFHYDCLLQEVIPHLSAYKQNKLEELQ
KKLAVTTQTTKSRHRPKEEDTVSLGKGQGSREQIKSDIDDIIACECVYCGELMIKSIDKP
FIDPQKFDQEMSSWL
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atggcatctattctggatcaatacgaagattctcagaacatccgtcaacacagccgcgtg
tcagcggccaacattgggataacccattcagggtttgtgaacgtgaggttggaggaagag
aaacctattttcaacaagcagcgcatcgatttttcacctcccgaaaaaatcaaccactta
tcagtgtgcaacaaccagttatgcatgagtctggggaaggacaccctgctgagaattgat
cttggaaaacctgatcagccaaatcagattgaactgggaagaaaggatgatagcaaagtg
cacaaactttttctagatcctacagggtcacatttagtcatctgcctaaccacaaacgaa
tgtgtatacctaaaccgaaacactcaaaaggtccgaagcctgtcacgatggagaggccac
ttgattgaaagcataggatggaacaaattaatcggctcggagaccaacaccgggccgatt
ctggtcggcaccagccagggaatcatctttgaagcggaaatctctgcctcagaggccact
ctgttcaacactaacccagaccagtacttcagacaggttcactccctagaagaggatggt
aaaccagctccggtttgttgccttgaggtggaacgcggcttggaatccaagtacttcatt
gttgcgaccacgcggaaacgcctgttccagtttgtaggaaagctggcagagggatccgag
cagcagggtttcagctccatcttcgcccagaaccaggatctcctgcccagcttccaggag
tttccagtcaacatgggctacagtgagattacattctacacatccaaattgcgcagttcc
ccaaagacctttgcatggatgatgggaaatggggtcttgtatggacagctggactacgtg
cggcctgactctctactcagtgatgttcaagtgtgggaatacacctcagacatcgattta
aactctgtcaagcccatctccatagtactcacccagttccactttctgctactgcttcca
gaccgcgtcaagagcatctgcactctgaacggacaggtagtgcacgaagaaaagtttttt
ccggaaaagtttggctgtctaaaaaagatgatcaaagatccaatcactgggctggtgtgg
atctacacggagaaggctgtgtttcgctaccacatccagagggaggcacgggacgtttgg
cagatgtacatgaacatgaataagtttgacctggctaaagagtactgcaaagacaggcca
gaatgcctagacatggtgctggccaaagaggcggagcactgcttccaaaacaagcgctac
ctagagagcgccaaatgctacgctctcactcagaattactttgaggagattgcactgaag
ttcatcgaagccaaacaagaggaggccttgaaagagtttctgattaagaagctgaccaac
ctcaagcttactgagaagactcagatcaccctgttggtcacctggctgacagaactctat
ctgaaccggctcggtcaactggagaccgatgacggcaaacaacacctctttctggagacc
cgtgaagagttccgcacctttcttaaaagccccaaacataaagactgcttctacaacaat
cgcaacaccatctacgacctgctcgctagtcacggtgacgtggacaacatggtgtatttc
tcagtcatcatgcaagattacgagcgtgtcatatctcattactgccagcatgatgactac
agtgcagccttagatgttctctccaaacactgcaatgacaagctcttttacaagttctcc
ccggtcctcatgcagcacatcccaaaaaaggtggtcgatgcatggattcaaatgggaaac
cggttggatccgaagaatctgatcccagcgctggtgaactacagccagatgggcagcatg
cagcagataaacgagaccatccggtacatggagttctgtgtgtatgagctggatgtcaaa
gatgaagccattcacaattacttactgtcgctttatgccaaacacaagccagatgcttta
ttgcagtacctcaaacaagcaggaacgcatgtctccgacatccactacgacttaaaatat
gccttgcgcctttgtgctgaacatggttacctgcaggcctgtgttttggtttataagatt
atggagctgtatgaggaagctgtggatctagctctacaagtggatgtagatttggccaag
tcttgcgccgaccttccagaggatgacgaggagttgaggaagaaactgtggctgaagatt
gctcgtcatgtggttcaggaagagaaagatgtcaagaaggccatgaactgtctgtccagt
tgcaaccttcttaagatcgaggacatcttgcctttctttccagattttgtcacgatagat
cacttcaaagaggcaatttgcaactcccttgaagagtacaaccaacacatcgaggagctg
aagcaagaaatggaggaggccacagaaagtgccaaacgcatccgtgaagacatccaggag
atgaggaacaagtacggtgtggtagagtctcaggaaaagtgtgccacttgcgacttcccc
ttgctcaacagacctttctatcttttcctgtgtggacacatgttccattatgattgcctc
ttacaggaagtcatccctcacctctctgcctataagcagaataaattagaggagcttcag
aaaaagctggcagtgaccacgcagaccaccaaatccaggcacaggcccaaagaggaggat
acagtcagcttaggcaagggccaaggaagcagagagcagatcaagtctgacattgatgac
atcatagcatgtgagtgtgtctactgtggtgagctcatgatcaaatccattgacaagcct
ttcatagatccacagaagtttgatcaagagatgtccagctggctctga
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