Puntigrus tetrazona (Sumatra barb): 122324844
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Entry
122324844 CDS
T08985
Symbol
ptbp1a
Name
(RefSeq) polypyrimidine tract-binding protein 1a
KO
K13218
polypyrimidine tract-binding protein 1
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptet03019
]
122324844 (ptbp1a)
03041 Spliceosome [BR:
ptet03041
]
122324844 (ptbp1a)
Messenger RNA biogenesis [BR:
ptet03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
122324844 (ptbp1a)
Spliceosome [BR:
ptet03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
122324844 (ptbp1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
122324844
NCBI-ProteinID:
XP_043075480
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All DBs
Position
2:12191229..12201145
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AA seq
574 aa
AA seq
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MDGRLETDLYPLGSSYVTEIDSVHDITVGTKRGSDELFSSCISNGPYIMSSGAANGNDSK
KFKGDIRSPGIPSRVIHVRKLPNDINEAEVISLGLPFGKVTNLLMLKGKNQAFLEMNTEE
SAQTMVSYYSSVTPVIRNHPIYMQYSNHKELKTDNSPNQVRAQAALQAVNAVQTGSMSLS
TVDGAGMGSQSPVLRVIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALVQYSD
GMTAQHAKLSLDGQNIYNACCTLRISFSKLTSLNVKYNNDKSRDYTRPDLPTGDSQPSLN
AQTMAAAALTAPGIISASPYAGAHGFPPTFAIQQAAGLSLQGVPAGALASLGVPGAAAAA
AAAAAAGRLSLSGLAAGGNSVLLVSNLNPESVTPQCLFILFGVYGDVMRVKILFNKKENA
LVQMSDGTQAQLAMSHLNGQKLYGKALRVTLSKHTTVQLPREGHEDQGLTKDYSNSPLHR
FKKPGSKNYSNIFPPSSTLHLSNIPPSVTEDHLRGLFLSSGAVVKAFKFFQKDRKMALIQ
LGSVEEAIESLIKFHNHDLGENHHLRVSFSKSTI
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atggacggccgtttagagactgatctgtatcctctgggatccagttacgtcactgaaata
gacagtgtccatgatataacggtcggcacaaagaggggatctgacgaactcttttcctcc
tgcatatctaacggaccttatataatgagctctggagcagcaaatggtaatgacagcaag
aagttcaaaggggacatcaggagcccaggcattccttcacgagtcattcatgtacgcaaa
ctgccaaatgacataaatgaagcagaagttatttctttggggcttccctttggcaaagtg
accaaccttctgatgctaaaaggaaagaaccaggccttcctggagatgaacactgaggag
tcagcacagactatggtcagctactactcctccgtcacccctgtcatccgcaaccatccc
atctacatgcagtattccaatcacaaggagctgaagactgacaactcacccaaccaagtt
agggcacaggcagcactgcaggcggtgaatgcggtacagacaggaagcatgtctttgagc
actgttgatggagcaggcatgggcagccaaagccctgttctgagagtcattgttgaaaat
cttttctacccagttactcttgatgttcttcaccagatcttctcaaagtttggcaccgtt
ttgaagattataacctttaccaaaaacaaccagttccaagcactggtccagtactcagat
ggaatgactgctcagcatgcaaaactgtctttagatgggcagaacatctacaatgcttgc
tgtacccttcgcatcagtttctctaagctcaccagcttgaatgttaagtataacaacgat
aagagcagagactacactcgccctgacttgcctaccggagacagtcaaccctccctcaat
gcacagacgatggctgcagctgccttgactgctcctggtattatctctgcatcaccatat
gctggggctcatggtttcccaccaacatttgccattcagcaggcagcaggtctgtctctg
cagggtgtgcctgctggggctcttgcatcgctcggtgtccccggtgcagcggcggcggct
gcggcggcagctgcagcaggacgcctgagtctttctggtctcgctgctggtgggaacagt
gtcctgctggtcagcaaccttaacccagagagcgttacgccccaatgcctctttattctt
ttcggtgtgtatggtgacgtcatgagagtgaagatcctattcaacaagaaagagaatgct
ttggtgcagatgtctgatggaacccaagcccagctagccatgagccacttgaatgggcag
aaactgtatggcaaggctttgcgggtcactctgtccaaacacaccactgtgcagctgcca
cgtgaaggtcatgaggatcaggggctcaccaaggactacagtaactctccccttcaccgt
ttcaaaaagccaggctccaagaactactccaacatcttccctccttcttctactctccat
ctttccaatataccgccttctgtcactgaggatcacctcagaggcctgttcctaagttca
ggagctgtggttaaggccttcaagtttttccagaaagaccgaaaaatggctctcatccag
ttgggctccgtggaggaagcaatagagtctctgatcaaatttcacaatcatgaccttggc
gagaatcatcacctcagagtgtctttctcaaagtccaccatctga
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