Puntigrus tetrazona (Sumatra barb): 122324981
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Entry
122324981 CDS
T08985
Symbol
trim54
Name
(RefSeq) tripartite motif-containing protein 54
KO
K10653
tripartite motif-containing protein 54
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
122324981 (trim54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ptet04121
]
122324981 (trim54)
Ubiquitin system [BR:
ptet04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
122324981 (trim54)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4
RING_XB3-XBAT31
zf-B_box
zf-C3HC4_2
zf-RING_5
zf-RING_2
zf-C3HC4_4
zf-RING_6
TRIM_CC
zf-C3HC4_3
Sina_RING
CYP38_PsbQ-like
SpoIISA_toxin
EFR3_ARM
DUF4202
Zn_ribbon_FGT1_2
CoiA_N
Motif
Other DBs
NCBI-GeneID:
122324981
NCBI-ProteinID:
XP_043075720
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All DBs
Position
20:complement(19601532..19615202)
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AA seq
358 aa
AA seq
DB search
MNFTLGFKPAMGDSSSVENLEKQLICPICLEIFTKPVVILPCQHNLCRKCANDVYQASNP
LWQNRGPVSAGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKSESTRPLLPKTEQ
QQLMCDQHEEEKINIYCLTCETPTCSMCKVFGAHKDCDVAPLPDIYKRQKTELSDAIAIL
VAGNDRTQALISQMEDICRTVKENGHRQMQYISDKFDELYAILEDRKRELIETVGREQDQ
KLSRVRSLIRRHGDHLEMSVKLVETAIQSMEEPQMAVFLQSAKEVFKKITDTAKASNIER
TEAGYESMAHFIINTENVADTLRGIDFQTGEDGEDSGDEGPEDLTTSPGQAGESGRRI
NT seq
1077 nt
NT seq
+upstream
nt +downstream
nt
atgaactttactttgggcttcaaaccagcgatgggagattcaagttcagtggagaactta
gagaaacaactcatttgccccatctgtctggagatattcaccaagcctgtggtcatccta
ccctgccagcataatctctgcaggaagtgcgccaatgatgtttaccaggcctccaaccct
ctttggcaaaaccgtggccctgtgtctgcggggggacgtttccgctgcccgtcatgtcgt
catgaagtggtattggaccggcatggagtatatgggcttcagaggaacctgctagtggag
aacatcattgatatctacaaatcagagtctaccaggccactcctgcccaaaacagagcaa
cagcagctgatgtgcgaccagcacgaggaggagaagatcaacatctactgcctcacctgc
gagacaccgacatgctccatgtgcaaagtgttcggggctcacaaagactgtgacgtggct
ccgctgccagacatttacaagagacagaagacggagctgagtgatgccatagccatcttg
gtggccggaaatgacagaacacaagccctgatatcacagatggaggatatttgtaggaca
gtcaaggaaaatggtcatcggcagatgcagtacatctcagataagtttgatgaactttac
gccatcctagaagaccgcaaaagggaactaatagagactgttggccgtgagcaggaccaa
aaactgagccgtgtgcgctccctcatccgtcgccacggagatcacttggagatgtctgtc
aaacttgtggagacagccatacagtccatggaagaacctcaaatggctgtgttcctgcag
agcgcaaaggaagtgttcaaaaagatcacagacactgccaaggcttccaacattgagcgg
acggaggcgggctacgagagcatggcccacttcatcatcaacacggagaacgtggccgac
acgctgagaggcatcgacttccaaacaggtgaagatggggaagacagcggtgatgaaggc
cctgaagacctgaccacctcacctggtcaggctggtgaatcagggagacgcatataa
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