Puntigrus tetrazona (Sumatra barb): 122325430
Help
Entry
122325430 CDS
T08985
Symbol
cpsf2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122325430 (cpsf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptet03019
]
122325430 (cpsf2)
Messenger RNA biogenesis [BR:
ptet03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
122325430 (cpsf2)
U7-dependent histone pre-mRNA processing factors
122325430 (cpsf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
122325430
NCBI-ProteinID:
XP_043076414
LinkDB
All DBs
Position
20:complement(20661011..20673120)
Genome browser
AA seq
787 aa
AA seq
DB search
MTSIIKLTALSGVQEESALCYLLQVDEFRFLLDCGWDESFSMDIIDSLKRYVHQVDAVLL
SHPDHLHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD
SAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIIYAVDFNHKR
EIHLNGCSLETISRPSLLITDSFNASYIQPRRKQRDEQLLTNVMETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLSLCHSLSDLARVPSPKVVLCSQPDLEAGFSRELFIQWCQDPKNSVILTYRTT
PGTLGRYLIDNPGEKRIELEIRKRCRLEGRELEEYMEKEKMKKEAAKKLEQAKEVDMDSS
DESDMDDDLEQPAVVKTKHHDLMMKGEGGRKGSFFKQAKKSYPMFPTHEERIKWDEYGEI
IRPEEFLVPELQATEEEKSKLESGLTNGEEPMEQDLSDVPTKCTSTTQTLDIRARVMYID
YEGRSDGDSIKKIINQMKPRQLIIVHGPAEASQDLAESCKAFSGKDIKVYTPKLQETVDA
TSETHIYQVRLKDSLVSSLQFCKAKDTELAWIDGVLDMRVEKVDTGVVAEMGDAKEETED
GELTMDVTPDLTTEPSAAANQRAMKTLFGEDEREISEESDVIPTLEPLPAQEVPGHQSVF
INEPRLSDFKQVLLREGIQAEFVGGVLVCNNLVAVRRTEAGRICLEGCHCDDYYRIRELL
YQQYAVV
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccatcatcaagctgacggctctttctggagtccaggaggaatcggctctctgt
tacctcttacaggttgacgagtttcgctttctgctggactgtggctgggatgaaagtttt
tccatggacattatagattccctgaagcggtatgtccatcaagtggatgcagtgctgctt
tctcatcccgatcatctgcatctgggcgctttaccttacgctgtgggcaaactggggctc
aactgcaccatctatgccaccatccccgtctacaagatgggccagatgttcatgtacgat
ctttatcagtctcgacacaacacagaagatttcactctgtttacactggatgacgtcgat
tcagcttttgacaaaatccagcagctgaaatactctcagatcgtcaacttgaaaggaaaa
ggtcacggtctgtccatcaccccacttcccgcgggccacatgatcggtggcacaatctgg
aaaatagtgaaggacggagaggaagagatcatctatgccgtcgatttcaaccacaagagg
gagattcacctgaacggctgctccctggagaccatcagcagaccgtctctcctcatcaca
gactccttcaatgcctcgtacattcagcctcgcaggaaacagcgcgacgagcagctgctc
accaatgtcatggagactctccgtggtgatggaaacgtgctgatcgccgtggatacggca
ggacgagtgctggaactggctcaactcttggatcagatctggaggaccaaagacgcagga
ttaggagtttactcgctcgccctgctcaacaacgtcagctacaacgtggtggagttctca
aagtctcaggtcgagtggatgagcgataaactgatgcgatgcttcgaggacaagaggaac
aaccctttccagtttcgccacctgtctctctgtcacagcttatccgatctggcccgtgtg
cccagcccaaaggtggttctgtgcagccagcctgatctggaggccggcttctcacgggag
cttttcatacagtggtgccaggaccccaagaactcggtcattctcacctacaggaccaca
ccgggaactctgggccgctacctcatagacaacccgggggagaagaggatcgagcttgag
ataagaaaacgctgccgactggaaggacgagaactagaggaatacatggagaaagagaaa
atgaagaaagaggctgccaaaaaactagagcaggcgaaagaggtggacatggactcgagt
gatgagagcgatatggatgatgatctggagcagccggcggtggtgaagaccaaacatcat
gacctgatgatgaagggcgagggtgggaggaaaggcagcttcttcaagcaggccaaaaag
tcctaccccatgttccctacacacgaggagcgaatcaagtgggacgagtacggagaaatc
atcagaccagaggagtttctggttccagagcttcaggccactgaagaggaaaagagcaaa
ctggagtctggactgaccaatggagaggagccaatggagcaggacttgtctgatgttccc
accaagtgcaccagcaccacacaaacactagacatcagagctcgagtcatgtacatagat
tacgagggccgctctgacggggactccattaagaagattataaaccagatgaaacccaga
cagctaatcatcgttcacggaccggccgaggccagccaggacctggccgagtcctgcaag
gccttcagcggcaaagacatcaaagtttacacaccaaaactacaggagacggtagacgcc
accagcgagacccacatttaccaggtaagactgaaggactcgttggtcagttcgctgcag
ttctgtaaagccaaagacacagagctggcctggatcgatggtgttctggacatgcgggtg
gagaaagttgacacaggagtcgtcgcagagatgggagacgccaaagaggagacggaggat
ggagagctgaccatggacgtcacaccagacctgacgaccgagcccagcgccgccgctaac
cagcgggccatgaagactctgtttggagaagacgagagggagatttcagaggagagcgac
gtcattcccacgctagaaccactgcctgctcaagaggtcccgggtcatcagtccgtgttc
atcaacgagcctcgtctgtcggactttaagcaggttctgctgcgtgaagggatccaggcc
gagtttgtgggaggagttttggtgtgtaataatctggtggctgtcaggaggacggaagcg
ggacgcatctgtctggaaggctgccattgtgatgactactacaggattcgtgagctgttg
tatcagcagtacgctgtagtttaa
DBGET
integrated database retrieval system
