Puntigrus tetrazona (Sumatra barb): 122326259
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Entry
122326259 CDS
T08985
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122326259 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptet03021
]
122326259 (pcf11)
03019 Messenger RNA biogenesis [BR:
ptet03019
]
122326259 (pcf11)
Transcription machinery [BR:
ptet03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122326259 (pcf11)
Messenger RNA biogenesis [BR:
ptet03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
122326259 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
DUF6980
Motif
Other DBs
NCBI-GeneID:
122326259
NCBI-ProteinID:
XP_043076932
LinkDB
All DBs
Position
21:6611003..6620143
Genome browser
AA seq
1457 aa
AA seq
DB search
MSDEGAREDACREYQSSLEDLTFNSKPHINMLTILAEENIQFTKDIVAIIEAQIAKAPAV
EKLPVLYLVDSIVKNVGGEYLEVFAKNLVNSFICVFEKVDEATRKSLFKLRSTWDEIFPL
KKLYALDVRVNSIDPAWPIKPLPPNVNASIHVNPKFLKPTEETSPKPPPPQPPAPSLTQE
QLIRQQLLAKQKQLLELQQKKIELELEQTKAQLAASPAVSSNHQAGAPGRFNVSSQATHT
VPASQTKPWLPAPSEKIATRDPRLNRLGATVNAKEQVHKKESQVTPNFPTTSEKRGQVLV
ERQSKLEKLRIPKKDNSAVEEKHKSKSVSPSGKCVVVRPRAIESEHSKTAEVNKKDPRLH
KEMHNRTDLKDDDVREKKRSSEKKDRDESIKNVDHQKSSSARGKLINGSVNKHERLETFL
KQEIKVNKANVRKRSRSRSRSPPLHSPKRKERRPSPKRKTRSITPPLKSGKARISKHSHN
DDAFPQSSLRDERSVKKNAPEPRRSKRPLDDRAADQKDGPQLRISPAEHKDIKDSKRWRS
GWEENKHPKQSDSDLSHGRLGNQRHKTWNTNQRPSTPRTPKQHRLSVDSNIQIPEALNTA
SKRDLLRKASKRHADGEISNDEFLNVAHQINQVFQYQEERQRSDSWDESCDEGVYQSKKK
HEAISDAQLSYLEHKSKLRRTQLQRPVQKEGQFPLDEILYQPQHEMSEQYSESSGVHKMT
GDPIKPDREDPRRTNRPPSCTGSTFRNSPSPVNLDGTCGKSAAPPFERSSSPVEMDQQPG
DISPRFESPNSVHSGTGPDDGPISVEGLPMQDHFSELGRSGRNHEESPGSTPTHSTEGSM
AQANPPRHEGPNISQRFDRYKSSQAPFDGPPSHMREQRLDGPPRPYAPSRYEGNAGGFEG
SGGPVRFSGHRFDAPHRFERFPKAHERPVRFNNPPVSHRPLRYTEPHNMRFDSQAPIHYD
HSMHQNRFVNPARFDNSHMQHGPSGYEEPRFSARLINYDEQQGAVRFDSPSGGMHFENPV
QPEPLRFDAPPVMPRYDPQGPPRYCSPNIANQLRPQEPTMYDQTQGQAPVINPVPPPNFN
MPPINTYGGPAQQFTMQSNVSQASNFSVSGPTSSDFQGSFRPASFPGPGVGNVPQPIIGA
QPFMPPNQISFQPGSQFQQPEAEPLRQIDVNDLLSKLISTGIIKPAQTDSITDSTSASQT
LSVPEEEEEEEQEEDESVPDLTGFVLDEMKLRHDSIITKLYTGIQCYSCGMRFTASQTDV
YADHLDWHYRQNRSEKDISKKVTHRRWYYTLTDWIEFEEIADLEERAKSQFFEKVHEEVV
QKTQEAAKEREFQSVKAAADVVHELCEICQEQFEMYWEEEEEEWHLKNAIRVDEKTYHPS
CYEDYKNTSSFVDCTPSPNKMLTENPLTAFIKQEQGDEASCSSIKEEPPEDDTEAPTVKE
EVQVKLEEETQTSAIIF
NT seq
4374 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgaaggcgcgagggaggacgcctgccgcgagtatcagtcctcgctggaagat
ctgactttcaacagcaaaccgcacatcaacatgctcaccattctagccgaagaaaacatc
cagttcaccaaggatatcgtcgcaataattgaagcacaaattgccaaggcacctgctgtt
gagaagctcccagttttgtacttagtggattccatagtgaagaatgttggaggggaatac
cttgaagtgtttgctaagaacctagtcaattcctttatttgtgtatttgagaaggtggat
gaggccactagaaaaagtctcttcaaattgcgttccacatgggatgaaattttccccttg
aagaaactatatgcactagatgtgcgtgtgaactcaatagatcctgcctggcctattaaa
ccattgccaccaaatgtgaatgccagcatacatgtcaaccccaaatttttaaaaccgact
gaagaaacctctccgaaacctcctccaccacaacctccagctccaagcttgacacaagag
caattgataaggcaacagttgcttgcaaagcaaaaacagttgttagaacttcaacaaaag
aagatagaactagaacttgaacaaacgaaagctcagttggctgccagtcctgctgtttca
tcaaaccaccaagccggtgctcctggacgcttcaatgtctcgtcacaagccactcatacg
gttcctgcctcacagacaaaaccttggcttccagcaccatcagaaaaaatagcaaccagg
gatcctagattaaacagacttggtgcaactgtaaatgcaaaggaacaagtgcataagaag
gaaagtcaggtcacaccaaactttccgactacttcagaaaaaagaggacaagtcttagtt
gaaagacaaagtaagttggaaaagttaaggattcccaaaaaggataactctgcagttgag
gaaaaacataaatccaagtcagtgtcaccatctggaaaatgtgttgtcgtcagacccaga
gcgattgagtctgagcattcaaaaactgctgaagtgaataagaaggacccaaggctgcat
aaggagatgcataacaggaccgatttaaaagatgatgatgtcagagagaagaaaagaagt
tcagaaaagaaagatagggatgaaagtatcaaaaacgtggatcatcagaagtccagcagt
gctaggggcaagcttataaatggctctgtaaacaagcatgaaagactcgagacatttctg
aaacaagaaattaaagtcaacaaagcaaatgtcagaaaaaggtctcggtcaagatcacgg
tcaccaccactgcattctcctaaaagaaaagagagacggccatctccgaagagaaaaacc
aggagtattactccacctctcaaatctggaaaggctaggataagtaaacattcacataat
gatgatgcttttccacagtcaagtcttagagatgaacgaagcgtcaagaaaaatgcccca
gaaccaagacgatcaaaaaggccacttgacgatagagctgctgatcagaaagatggacca
cagttgagaatttctcccgcggagcataaagacataaaagatagcaagagatggaggagt
gggtgggaagagaataaacatcctaaacagtcagattcagatctatcccatggacgacta
ggcaaccagagacacaagacttggaacactaatcaaagaccgtccacacctcgtacacct
aaacaacatcgcttaagtgttgatagcaacatacaaataccagaagcacttaatactgca
agtaaacgggaccttttaagaaaggctagcaaaagacatgctgatggagaaatatccaat
gatgaattcctgaatgtagcccatcaaataaatcaagtttttcagtatcaagaggaaaga
cagaggtctgactcttgggatgagtcgtgtgatgagggagtatatcagtcaaaaaagaaa
catgaagccatttctgatgcacagctttcttatcttgaacataaatcaaagctgagaaga
acacagcttcagcgtccagtgcaaaaagagggccagtttcctttggatgaaattctttat
cagcctcaacatgaaatgtctgaacaatacagtgaaagctcaggagtgcataaaatgact
ggtgatcccataaagcctgaccgtgaagatcctagaagaaccaacaggcctccatcatgt
acaggttccacattcagaaattcaccaagtccagtcaacttagatgggacctgtggaaaa
tctgcagcaccaccatttgaacggtcatcatctccagttgaaatggatcaacaaccaggg
gacattagtccacgttttgaaagtcccaacagtgtgcactctggtacaggtccagatgat
ggtcctataagtgtagaaggtcttccaatgcaagatcatttctctgaactgggaagaagt
ggacgaaaccatgaagaatctcctgggagtacaccaacgcactcaacagaaggatctatg
gcacaggcaaacccaccacggcatgaaggaccaaatatttctcaacgatttgatagatat
aagagttctcaagctccttttgatggtccaccaagccacatgagggagcagaggttagat
ggtcctccaagaccatatgctccttctcggtatgaaggcaatgcaggcgggtttgaaggg
tctggtggacccgtaaggttttctggacatcgctttgatgcccctcaccgatttgagaga
tttcctaaagcgcatgaaagacctgtaagatttaacaacccaccagtatcacacaggcca
ttgaggtacacagagcctcacaacatgagatttgactctcaagccccgattcattatgac
cactcgatgcaccaaaacagatttgttaatccagcaaggtttgataattctcacatgcaa
cacggtccatcaggatacgaggaaccacggttctcggctagactaataaattatgatgaa
cagcagggtgcagttagatttgatagtccatcaggtggaatgcactttgagaaccctgtg
cagcctgaacctttaagatttgatgcaccgcctgtcatgccaagatatgacccacaaggt
cctccaagatactgcagtccaaatattgcaaatcagctgagaccacaggagccaacaatg
tatgatcaaactcaaggtcaagctcctgtgataaaccctgttccaccacctaattttaac
atgccacccataaacacgtatggtggcccagcccaacagtttaccatgcagtctaatgtt
tctcaagcgtctaacttcagtgtgtcaggtcctacatcatcagattttcaaggttcattt
agacctgcttcattccctggtccaggtgttgggaatgttcctcagcctatcataggagct
caacccttcatgccaccaaaccaaatatctttccagcctggttcccagtttcagcagcct
gaggccgagccactgaggcaaatagatgtgaacgatctgttgtctaaactcatatccact
ggaataataaaacctgcacaaacagactcaatcactgactctacttcagcaagtcagact
ttatctgtgcctgaagaggaagaggaggaggaacaggaggaagatgaaagtgtcccagat
ctgactggcttcgttttggacgaaatgaaactgagacatgacagcatcatcaccaaactg
tatacaggaatccagtgctattcctgtggcatgcgttttactgcatctcagacggatgtg
tatgcagatcatttggactggcactacaggcagaatcgttcagagaaggacatcagtaag
aaagttacacaccgtcggtggtactacactctgacggattggattgaatttgaggaaatt
gcagatcttgaggagagggcaaagagtcagttctttgaaaaggttcatgaagaggttgtg
cagaaaactcaggaagcagccaaagagagagagttccagagcgtaaaggctgcagcagat
gtcgttcacgagctgtgtgagatatgtcaggagcagtttgagatgtactgggaggaggaa
gaggaagagtggcacctgaagaatgccatcagagtcgatgaaaagacatatcatccctca
tgctacgaagactacaaaaatacatcctcttttgtggactgcacaccttcacccaataaa
atgcttacagaaaaccctttaacagctttcataaaacaagagcagggtgatgaggcgtca
tgctccagtattaaagaagagccccccgaggatgatacagaagcaccaacggtaaaagag
gaggttcaggttaagttagaagaagaaacacaaaccagtgcaattattttctaa
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