Puntigrus tetrazona (Sumatra barb): 122326715
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Entry
122326715 CDS
T08985
Symbol
cnot6a
Name
(RefSeq) CCR4-NOT transcription complex subunit 6a
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122326715 (cnot6a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptet03019
]
122326715 (cnot6a)
Enzymes [BR:
ptet01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
122326715 (cnot6a)
Messenger RNA biogenesis [BR:
ptet03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122326715 (cnot6a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122326715 (cnot6a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_14
LRR_4
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
122326715
NCBI-ProteinID:
XP_043077764
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All DBs
Position
21:complement(11973113..11985072)
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AA seq
557 aa
AA seq
DB search
MPKEKYDPPDPRRMYTIMSSEEAANGKKSYWAELEIVGKVRSLSTALWSLTHLTALHISD
NSLSRIPPDIAKLQNLVYLDLSSNKIRSLPSELGNLVNLRELLLNNNQLRVLPFELGKLF
QLQTLGLKGNPLAQEILNLYQEPDGTRRLLNYLLDNLAGTKRVPIEQPPPRSWIPLQEHD
RTRPAALFSVMCYNVLCDKYATRQLYGYCPSWALNWDYRKKSIMQEILNCSADIISLQEV
ETEQYYNYFLVELKEQGYEGFFSPKSRARTMSESDRKHVDGCAIFYKTEKFSLVQKHTVE
FNQLAMANSEGSEAMLNRVMTKDNIGVAVLLELRKEIMEQSAGKPLHGIEKQLLLVANAH
MHWDPEYSDVKLVQTMMFLSEVKNIVDKATRSLKLSSVSGEPNAIPLVLCADLNSLPESG
VVEYLSTGGVDSTHKDFKELRYIDSLTNFNCNGKNGTSSTRITHGFKLKSAYENGLMPYT
NYTFDFKGIIDYIFYSQPLLNVLGVLGPLDPHWLLENNVTGCPHPHIPSDHFSLFAQLEL
LLPYLPVVNGIHLPGRR
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaggaaaaatatgacccgccagacccaaggcggatgtacactataatgtccagt
gaggaggcggccaatgggaagaagtcatattgggcagagctggagattgttggaaaagtg
aggagtttaagtacagcattatggtctcttacccacctcactgctcttcatatcagtgat
aactcgctttcacgaatcccgcccgacattgccaaactacaaaacttggtgtacctggac
ctctcgtccaacaagatcaggagcctgccctctgagctaggcaacttggttaatctcagg
gaactgcttttaaataacaaccagttacgagttctgccttttgagcttggaaaactcttt
cagttacaaacgttgggtttgaaaggaaacccacttgcacaagaaatcttgaacctctac
caagagcctgatgggacacgtcggctcctcaactacctgctggacaatctcgcaggcacc
aaacgtgtacctattgaacagccaccacctcgctcatggataccactgcaggagcacgac
agaacacggccagcagcacttttctctgtaatgtgctacaatgtgctgtgtgacaagtac
gccacgcgtcagctctatggctactgtccctcttgggccctcaattgggactacaggaag
aaatccatcatgcaggagattctcaactgcagtgcggatattatcagcttacaggaagtg
gaaacggagcagtactacaactatttcctggtggaactgaaggaacaaggttacgaagga
ttcttcagtcctaagtcccgagccaggaccatgtctgaatctgaccgcaaacatgtggat
ggctgcgcaatcttctataaaacagagaagttcagtctggtgcagaaacacacagtggag
ttcaaccagctggctatggcaaattcagaagggtcagaggccatgttgaacagggtgatg
acgaaggacaacatcggagtcgctgtcttactagagctgcggaaagagattatggagcag
tctgccggaaagcctctgcatggcatcgagaaacagctcctcctcgtggccaatgctcat
atgcactgggacccagagtactcggatgttaagcttgtccagaccatgatgtttctgtcc
gaagtgaagaacattgtggacaaagccactcgcagtctcaagctttcctccgtctcagga
gaacctaatgccatccctctcgtcctgtgcgctgacctcaactctctacctgagtcgggt
gtggtggagtacctgagcacaggtggtgtggacagcacccacaaggacttcaaagagctg
cgatatattgacagcttgaccaacttcaactgcaatggcaagaacggcacctccagtacc
aggatcacgcacggcttcaagctgaagagtgcctacgagaacggcctgatgccttacacc
aactacacatttgactttaagggcatcattgactacatcttctactctcaacctttgctt
aatgtgctgggtgtgctgggtcccttagacccccactggctcctcgagaacaatgtcact
ggctgcccccatccccatatcccttctgatcacttctccctgtttgcacaactggagctg
ctcctgccctatctgcctgttgtcaacggcattcatctgcctggtcgcaggtag
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