Puntigrus tetrazona (Sumatra barb): 122326753
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Entry
122326753 CDS
T08985
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03440
Homologous recombination
ptet03450
Non-homologous end-joining
ptet04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122326753 (rad50)
03450 Non-homologous end-joining
122326753 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
122326753 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptet03032
]
122326753 (rad50)
03400 DNA repair and recombination proteins [BR:
ptet03400
]
122326753 (rad50)
DNA replication proteins [BR:
ptet03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
122326753 (rad50)
DNA repair and recombination proteins [BR:
ptet03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
122326753 (rad50)
BRCA1-C complex
122326753 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
122326753 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rad50_zn_hook
AAA_23
AAA_21
AAA_15
SbcC_Walker_B
SMC_N
ABC_tran
AAA_29
Intein_splicing
AAA_13
AAA_22
AAA_16
Motif
Other DBs
NCBI-GeneID:
122326753
NCBI-ProteinID:
XP_043077824
LinkDB
All DBs
Position
21:15207194..15225447
Genome browser
AA seq
1312 aa
AA seq
DB search
MSKIEKMSILGVRSFGVEDKDKQVITFFSPLTVLVGPNGAGKTTIIECLKYITSGDFPPG
SKGSTFVHDPKDAHETDVRAQIRLQFRDVNGAPVAVQRSMQSTQKGKKTEFKTLEGVITR
FKHGEKVGLSSKCAEMDREMISALGVSKAVINHVIFCHQEESNWPLSEGKALKQKFDDIF
SATRYIKVLETLRVLRLKQAGIVKTCQTELKYLKQNKDKAQEIKELLSTKETQLASSKES
VQRVESEIDPLENRMYDIDNSLSKVLKLDIDIKALDSRKKQMEDDNRELEEKMEQVFQGT
DDQLQDMYQNHQRTVKEKERRLTECQRDLERAGRECQKMNRTKSELLVEQGRLQLEADRH
TQSIKKRDTQVKSLASCLELEGYDRTPLSERQLQSFHRQVKERLDQDTEALNQTMHDMQQ
KEAQKQQSIDDLRDKKTGLERTIELKRDIQAKKQQELKNIKSDLQRLEGSSSRLQELEAE
LQKAERELDNAMQACTVDSLKAEVIELQKEKTELDQAQRKLDQEMELLNTHTAARTQMDM
LKKTKMEKDEQVRKIKSRHNEELVSLLGHFPNKKELEDWIYSKSKEINSTRDRLNKMNKE
LASGEQKKSHFTAEVKRKEEQLASYEERLFNVCGSQDFESDLNKLEDELEKCSKQRAMLA
GATAVYSQFISQLTEEGEPCCPVCQRVFPSEAELQDVINDMQSKLRLVPDKLKNTEHDLK
RKERRRDEMMALKPIRLSIAELQEKELPELRNELQRVNRDIEKLKGDTEEQETLLCTLMS
EEDTAKACLQDISLMDRYQLDLKDVERKIAQHAARLQGVDLSRTMQQVSQEKQETQHRLD
TTCSKIELKRKLIQDQQDQIQALRSSVNEIRGEKLQISSNMQKRQQLEEQCVEFSTEIQT
LHRDIRDAKEQVSPLAASLEKLQQEKQDLAERRRQKQEEGQEKINGIKEKVRNLTILERE
ITKYIEEGKDSYKEQKETELQEVDKQLHEAEKQREKINKDIGNIRQDIDTQKVQERWLQD
NLTLRKRVEELKEVSRKREDLVKEMGNLKVLQLRNERREVERKLEDLKKNRSVALGRQKG
YEDEILRFRKELSEDQYCRAEDLYRDQMIVMRTTELANKDLDIYYKALDQTIMKFHSMKM
EEINKIIRDLWRSTYRGQDIEYVEIRSDVDENTSAGLKRRTYNYRVVMVKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSRQR
NFQLLVITHDEDFVELLGRSNYVEHFYRIRKNQDQCSEITKCNINTLNSYLH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagattgaaaagatgagtatcctgggagtaaggagttttggagttgaggataaa
gacaagcaagtgatcaccttcttcagccctctgacagtccttgtgggacctaatggagct
ggaaaaacgaccatcattgagtgtctcaaatacatcacttcaggagactttccaccagga
agtaaaggaagcacatttgtccatgatcccaaagatgcccatgagacggatgtacgggcg
cagatcagactccagtttagagacgtgaatggcgctcctgtggctgtccagaggtctatg
caaagcacacagaagggcaagaaaaccgagttcaagactctcgagggtgtcattacgaga
ttcaagcatggagagaaagtgggcctgagctctaaatgtgctgaaatggaccgtgagatg
atctcagcactgggcgtctccaaggccgttatcaaccatgtcatcttctgccatcaagag
gagtccaactggcctctcagtgaaggaaaagccctcaaacagaagtttgatgacattttc
tcagccacaaggtacattaaggtattagagaccctgcgagtgctgaggttgaagcaggcc
ggcattgtcaaaacgtgccagacagagctcaagtacctgaaacagaacaaagataaagcc
caagagattaaagagctgctgtccactaaagagactcagctggcttcctctaaagaaagt
gtccaacgcgttgagagtgagattgaccctctggagaatcgaatgtatgacatagacaac
agcctcagcaaagtgttgaagttggatattgacatcaaagccttggacagcaggaagaaa
cagatggaggatgataatcgggaactggaggaaaagatggaacaggtgtttcagggcaca
gatgatcagctgcaggacatgtatcagaaccaccagaggactgtgaaggagaaggaacgg
agacttacagagtgccagcgtgatcttgaacgtgccggccgagagtgccagaagatgaac
cgcaccaaatctgaactactagttgagcaaggccgcctgcagttggaggcagatagacac
actcaaagcataaaaaagagggacacccaggtcaagagtttagcgtcttgtctggagttg
gagggttatgaccggacccctcttagtgagcgacagctccagagcttccacagacaagtc
aaagagagactggatcaggacacagaggccctcaaccaaaccatgcatgatatgcagcag
aaagaggcacagaagcagcaaagcatcgatgatctccgagataaaaagacgggtctagag
agaaccattgagctgaagagagacatacaggccaagaaacaacaggaactgaaaaacatc
aagtctgacctccagagactggagggctcctcaagcagactacaggagctagaagccgaa
cttcagaaagcggagcgtgagctggacaatgccatgcaggcctgtacagtggacagtcta
aaggcagaggtgattgaactacagaaggagaaaactgaattggatcaggcccagcgcaag
ctagatcaggagatggaattgctgaacacacacaccgcagcacgcacacagatggacatg
ctcaagaagaccaagatggaaaaagacgagcaagtgaggaagatcaagtcgagacataac
gaagagctggtgtctctgttgggacactttccaaacaagaaagagctagaagattggatc
tactccaaatccaaagagatcaactccaccagagaccggctcaacaaaatgaataaggag
cttgcatctggagaacagaagaagtctcactttaccgcagaagtcaaacgcaaggaagag
cagctggccagctatgaagagagactttttaatgtgtgcggcagtcaggactttgagtct
gacttgaacaagctggaggatgagttggagaagtgttccaaacagagagctatgctggcg
ggtgccacagccgtgtacagtcagttcatcagtcagctgacggaggagggcgagccgtgc
tgtcccgtgtgtcagcgtgtgttcccgtcagaagcagagctccaggacgtcattaacgac
atgcagtccaagctgcgactcgtcccagacaaactaaagaacactgaacatgacctgaag
aggaaggagcgcaggcgtgatgaaatgatggcactgaagcccatcaggctgtccatagca
gagctccaggagaaagagctcccagagctcagaaatgaactccagcgtgtgaatcgagac
attgagaagctgaaaggagacactgaggagcaagagacactgctatgcacactgatgtct
gaagaagacacagccaaggcctgtctgcaggacatatcactcatggatcgctatcagctt
gatctgaaggatgtagagaggaagatcgctcaacatgcggccaggctgcagggagtcgac
ctcagccgcaccatgcagcaggtcagccaggagaaacaagagacccaacaccggctggac
accacctgcagtaagatcgagctgaagaggaaactgatccaggaccagcaggaccagatc
caagccttgaggagcagcgtgaatgagattcgtggagaaaagctccagatctccagcaat
atgcagaaacgtcagcagttggaggagcagtgtgtggagttctccactgagatccaaaca
ctccacagagacattcgagatgcaaaggagcaggtgtctcctctagctgcctctttggag
aagctccagcaggagaaacaagaccttgctgagcgccggagacagaaacaggaggaaggc
caggaaaagataaatggaatcaaggaaaaagttagaaacttgaccatccttgaaagagag
attaccaagtacatagaagagggcaaggacagctacaaagagcaaaaagaaactgagcta
caagaagtggacaaacaactacacgaggctgaaaagcagcgagagaagatcaataaagac
attggcaacattcgacaagatattgacacgcagaaggttcaagagcgctggctacaggac
aacttgaccttacgaaagcgtgtggaggagctgaaagaggtatccagaaaacgcgaagac
ttggttaaagagatgggcaacctgaaagttctgcaactgcgcaacgagcggcgagaagtg
gaacgaaagttagaggacctaaaaaagaaccgcagtgtggctctcggtcgacagaaaggt
tacgaagacgagatcctccgttttcgtaaagagctcagcgaggatcaatattgccgggcc
gaggatctctacagagaccaaatgattgtgatgagaacaacagagttggccaataaggac
ctggacatctactataaagccctagaccaaacaataatgaagtttcacagcatgaagatg
gaggagattaataaaatcatcagagatttatggcgaagcacgtacagaggacaagacatt
gagtatgtggagatacgctctgatgtggacgagaacacctctgctggcctgaaaagaagg
acctataactatagagtggtaatggtcaaaggagacactgctttggacatgcgtggacgt
tgcagtgctggacaaaaggttcttgcatctctcataatacggttggctctggctgagacg
ttttgtttaaactgtgggattctggcactggatgagcccaccaccaacctggatagagag
aatatagagtctttggcacacgcgctggtggagataatcaagagtcgttctcgccaacga
aacttccagctccttgtcatcactcacgacgaggactttgtggagcttctgggacggtcc
aactatgtggagcatttctacaggatcaggaagaaccaggaccagtgctcggagatcacg
aagtgtaacatcaacactctcaactcctacctgcactga
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integrated database retrieval system
