Puntigrus tetrazona (Sumatra barb): 122327348
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Entry
122327348 CDS
T08985
Symbol
smarcd1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122327348 (smarcd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptet03021
]
122327348 (smarcd1)
03036 Chromosome and associated proteins [BR:
ptet03036
]
122327348 (smarcd1)
Transcription machinery [BR:
ptet03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122327348 (smarcd1)
Chromosome and associated proteins [BR:
ptet03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
122327348 (smarcd1)
PBAF complex
122327348 (smarcd1)
GBAF(ncBAF) complex
122327348 (smarcd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
122327348
NCBI-ProteinID:
XP_043078586
LinkDB
All DBs
Position
22:complement(4777983..4785215)
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AA seq
510 aa
AA seq
DB search
MAARSGFQPATPGGGGAPMGPGPPVAGAGPGMGPGTPSGRMGPGGPQNHMYRSPMPGYPR
PGMPPASRMTPQGPSMGPPGYGASPVSRPGMPVMDPSRKRPPPNQIQQVQQQNRNQHAKK
KKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIF
ISNTFNPAKPDAEDGEGTVASWELRVEGRLLEDTAVSKYEATKQKRKFSSFFKSLVIELD
KDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVGVRCTVLLMLDYQPPQFKLDPRLARLL
GIHTQTRPVIIQALWQYVKTHKLQDPHEREFINCDKYLQQIFETQRMKFSEIPQRLHALL
MPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIAGLDNKIH
ETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAEFYYQP
WAQEAVCRYFYSKVQQRRQELEQALGIRNT
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcgtagtggttttcagcctgcgacacccggaggcggcggagctccgatggga
cccggaccgccggtagccggtgcggggcccggaatgggtcccggtacgccctcgggacgg
atggggcccggcggcccgcagaaccatatgtatcgatcaccgatgcccggatacccgaga
ccaggaatgcctccagccagtcgcatgacccctcagggaccctctatgggacccccaggt
tacggggccagtccagtgtcccgtcccggtatgccagtcatggacccgtctcgcaaacga
ccaccgccaaatcagattcaacaggtccagcaacagaatcgcaaccaacatgccaagaag
aagaaaatggcagataaaattctacctcagagaatcagagagcttgttccagagtctcag
gcgtacatggacctgctggcgtttgagaggaagctcgaccagaccatcatgcgcaaaagg
ctcgatattcaggaagctctcaaaagacccatcaagcaaaaaagaaaactacgcatattt
atctccaacaccttcaatcctgccaaaccagatgcagaggatggcgaaggaactgttgca
tcttgggaactgcgtgtggaaggacgactccttgaagacactgctgtgtccaagtatgaa
gccaccaagcaaaagaggaagttttcctcttttttcaagtctttagtgatcgagttggac
aaagacttatatggacctgacaatcatttggtggagtggcaccgaacagccacgactcag
gagaccgatggatttcaggtgaagaggcctggagatgttggcgtccgttgtactgtactg
ctcatgctggactaccagcctcctcagtttaaattggaccccagactggcccggttgctg
gggatccacactcaaacgcggcctgtgatcattcaggctttgtggcaatatgtgaagacc
cacaaactccaggaccctcatgaacgagagttcattaactgtgataaatacctccagcag
atctttgaaacccagaggatgaagttttctgagattcctcaacgtctgcatgcactactg
atgccccccgagccgatcatcatcaaccatgtcataagcgtggatcccaatgaccagaaa
aagactgcgtgctacgatatagacgtggaggtggatgacaccctgaagacccagatgaac
tcttttctgctgtccacggccagtcagcaagagattgcaggccttgacaacaagatccat
gagaccattgaaaccattaaccagctgaagactcaaagggagtttatgttgagctttgca
cgtgacccgcagggcttcatcaatgactggctccagtcgcagtgccgagacttgaagact
atgactgatgtggttggaaacccagaggaagagaggagagccgagttctactaccaaccc
tgggctcaggaagctgtgtgccgatatttctattcaaaggttcagcaaaggagacaggag
ctggaacaggctcttggcattcgaaacacataa
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