Puntigrus tetrazona (Sumatra barb): 122328041
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Entry
122328041 CDS
T08985
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03030
DNA replication
ptet03410
Base excision repair
ptet03420
Nucleotide excision repair
ptet03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122328041 (lig1)
03410 Base excision repair
122328041 (lig1)
03420 Nucleotide excision repair
122328041 (lig1)
03430 Mismatch repair
122328041 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptet03032
]
122328041 (lig1)
03400 DNA repair and recombination proteins [BR:
ptet03400
]
122328041 (lig1)
Enzymes [BR:
ptet01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
122328041 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
122328041 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
122328041 (lig1)
DNA replication proteins [BR:
ptet03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
122328041 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
122328041 (lig1)
DNA repair and recombination proteins [BR:
ptet03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
122328041 (lig1)
NER (nucleotide excision repair)
Other NER factors
122328041 (lig1)
MMR (mismatch excision repair)
Other MMR factors
122328041 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
122328041
NCBI-ProteinID:
XP_043079688
LinkDB
All DBs
Position
2:complement(21374604..21389702)
Genome browser
AA seq
976 aa
AA seq
DB search
MQRSIASFFQPMKSKEKSDGQVKAKTEPVKSPLKIQNGVQESDSPVKRVHKRSRVIVDSD
DEDQAIVKEQVPKQSEAEAVKPEKKSDATKAVSTPVSPKTPITPTTPVASSTSVSVGTPA
SSGAPGTPATPTSTSPSGIPKRKTARKQFPKRKLESRSDGEETKEEEMEVDGEQESKRAR
VETSTGQTDHEMMEVEEKNAEEKTSVEEQKETDEAKTTVAEDSANNKMKEKEKKMNGEKG
KKEKKEDKKDRSPEQVVKEKNTVEEGGSAKKKPISSFFTPRKAAVKLEKQERNEGEKKKD
GEISDAPEQKDKKSEKGVDSAVQSQYDPSRAHYHPVDHACWSKGQKVPYLAVARTFEKIE
EDSGRLKNIETLSNFLRSVILLSPDDLLCCVYLCLNQLGPAYQGLELGVGETVLMKAVAQ
ATGRQMDKIKAEAQEKGDLGLVAESSRSNQRMMFAPANLTAWGVFNKLKEIANMSGNSAM
NKKIDIIKGLFVACRFSEARYIVRSLAGKLRIGLAEQSVLTALSQAVCLSPPGQEFPPAV
LDAGKGMSAENRRVWLEEKALILKQTYCEMPNYDAIIPVLMKEGIDELPNHCKLTPGVPL
RPMLAHPTKGVGEVMKRFDEASFTCEYKYDGERAQIHILENGEVRVFSRNQEDNTSKYPD
IISRIPQVKKDSVRSCVLDSEAVAWDREKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAF
DLLYLNGESLVREPLSKRRALLRESFEEKEGEFVFARFLDSDNTESIAEFLEQSVRDSCE
GLMVKTLEKHATYEIAKRSHNWLKLKKDYLEGVGDTVDLCVIGAYLGKGKRAGSYGGFLL
ACYDEENEEFQTVCKIGTGFKDEDLEQHYNFLKEHILPKPRPYYRVDQSAEPDVWLEAVQ
VWEVKCADLSLSPVYKAAMGLVDPEKGISLRFPRYLRIRDDKKPEDATTGSQIADLYKKQ
QQIQNQGEKQDLEDYY
NT seq
2931 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagcatagcttcattctttcagccaatgaaaagtaaggagaagagtgacgga
caggtcaaagcaaagaccgaacctgtaaaaagtcccctcaaaattcaaaatggtgtgcag
gaaagcgattcaccagtaaagagggttcataaacgcagtcgggtgatcgtagacagcgac
gatgaagatcaggcgatagtaaaagagcaggtgccaaagcagagtgaagctgaagcagta
aagccagagaagaaatctgatgctacaaaggctgtttccactccggtgtctccaaaaact
cccataaccccgacgactccagttgcgtcaagtacctctgtttcggtgggaacccctgct
tcctcaggtgctccgggaactcctgcaactccgacatcgacatcgccttcaggcattccc
aaacgcaagaccgcccgcaagcagtttcccaagaggaagctggaaagcagaagtgatgga
gaggagacaaaagaggaggagatggaggtcgacggagagcaggagagtaagagagcacga
gttgagacctcaactggacagacagaccatgagatgatggaggtggaagagaagaacgcg
gaggagaagacttcagtggaggaacagaaagagacagatgaagcaaaaacaaccgtagct
gaggacagtgctaacaataagatgaaagaaaaggagaaaaagatgaatggagaaaaaggg
aagaaagaaaaaaaagaagacaagaaagatagaagccctgaacaagtggttaaagaaaaa
aacacagtagaggaagggggatcggccaaaaagaaacccatcagcagcttttttactccc
agaaaggcggccgtcaaattggaaaaacaggagcgaaacgagggagaaaaaaagaaagat
ggagagatctcagacgctcctgaacagaaagacaagaaaagtgaaaagggggtggattct
gctgtccagagccagtatgatccctccagagctcattaccatcccgttgaccatgcctgc
tggagcaagggccaaaaagtgccatatttggctgtcgctcgcacctttgagaagattgaa
gaggattcgggcaggctgaagaacattgaaacgctttccaactttctgcgatctgtaatt
ctgctttctccagatgacctgttgtgctgtgtgtacctgtgtttgaatcagctcggccct
gcatatcagggcctggagttaggcgttggggaaaccgtcctgatgaaagctgtcgctcaa
gcaactgggcgacagatggacaaaatcaaggcggaggctcaggagaaaggtgacctggga
ttggtggctgaaagttcacgcagcaaccagagaatgatgtttgccccggcaaatctgaca
gcatggggtgttttcaacaagctgaaagagatcgctaacatgagtggaaactctgcaatg
aataagaagattgacatcattaaaggcttgtttgtggcatgtcggttttccgaggctcga
tacattgtgcggtcactggctgggaagctgcggatcggattggctgagcagagcgttctc
acggctctcagtcaggctgtgtgtctgtcgcccccaggccaagagttcccaccggctgtg
ctggatgcagggaaaggaatgagtgcagaaaacaggagagtgtggctggaggagaaagca
ctgatcctgaagcagacatactgtgagatgccaaattatgatgcaatcattcctgtattg
atgaaggagggcatagatgaactgcccaatcactgcaagctcaccccaggtgtgcccctg
cggcccatgttggctcacccgactaagggggttggtgaggtaatgaaacgtttcgatgag
gcatctttcacctgcgagtataaatacgacggagagagagcccagatccatattcttgaa
aatggagaggtgcgcgtttttagccgaaaccaagaagacaacacaagcaaataccctgat
attatttcacgaatcccacaggtaaaaaaagacagcgtacgctcttgtgttctggattca
gaggcggtggcctgggacagagaaaagaagcagatccagccatttcaggtcctcactaca
aggaagagaaaggacgtggatgcatccgagatcaaggttcaggtctgtgtgtatgccttt
gatctgctttacctcaatggagagtctctggtgcgagagcctctgagcaaacgcagggct
ctgttaagggagagttttgaggagaaagaaggagagtttgtttttgctcgatttctggac
tctgacaacacagagagcattgctgagttcctggagcagtccgtacgagattcttgtgag
ggccttatggtgaagacgttggaaaaacacgcaacttatgagattgccaaacgctcccac
aactggctcaagctgaagaaggactatctggagggtgtaggagatactgtggatctctgt
gtgatcggtgcttatctggggaaggggaagagagcaggcagctatggaggatttttactg
gcctgctacgatgaggagaacgaggagttccagactgtctgcaagattgggacaggcttc
aaagatgaagatctggagcaacattacaattttttaaaggagcacatcttacctaaacca
cgtccttattaccgtgtggaccaatcagcagagccggatgtgtggctggaggcggtgcaa
gtgtgggaggtgaaatgtgctgacctttcactgtctccggtctacaaggcagcgatggga
ctggtggacccagagaaaggcatttcactgcgtttcccacggtatctcaggatcagagat
gacaaaaagccagaagatgccaccacagggtcacagattgcagatctttacaagaagcag
caacagattcaaaatcagggcgaaaaacaagatctggaggactactattga
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