Puntigrus tetrazona (Sumatra barb): 122328505
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Entry
122328505 CDS
T08985
Symbol
exosc4
Name
(RefSeq) exosome complex component RRP41
KO
K11600
exosome complex component RRP41
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122328505 (exosc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptet03019
]
122328505 (exosc4)
Messenger RNA biogenesis [BR:
ptet03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
122328505 (exosc4)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
122328505 (exosc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
122328505
NCBI-ProteinID:
XP_043080163
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Position
2:complement(4029602..4032756)
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AA seq
245 aa
AA seq
DB search
MAGLELLSDQGYRLDGRKASELRKVRARMSVFAQADGSAYLEQGNTRALAVVYGPHEIRG
SRSKALHDRAVINCQYSMATFSTAERKRRPHGDRKSSEMSLHLKQTFEAAVLTELYPRSQ
IDIYVKILQADGGNYSACVNAATLALVDAGIPVRDYVCACTAGFVEDTPLADLCHAEESG
GGTSLALALLPRSGNIALLQMDARLHQDHLDALIEAAMTACKGLGEVLDGVVRQHLEEVS
VLTGE
NT seq
738 nt
NT seq
+upstream
nt +downstream
nt
atggcggggctggagctgctgtcggatcagggataccggctcgacgggcggaaggcgtcc
gagctgcgcaaggtccgggcccgcatgagtgtgttcgcgcaggccgacggatccgcctac
ctggagcagggcaacaccagagccctggccgtggtgtacgggccgcacgagatacggggc
tcccgcagtaaagcgctgcacgaccgcgccgtcatcaactgtcagtacagcatggccacg
ttcagcacggccgagaggaagcggcgtccgcacggagacaggaagtcgagcgagatgagc
ctgcacctcaagcagacgttcgaggcggcggtgctcaccgagctctacccgcgctcacag
atagacatctacgttaagattctgcaggcagacggcgggaactacagcgcgtgtgtgaac
gcggccaccctggcgctggtggacgccggcatccccgtgcgtgactacgtgtgcgcctgc
accgccggcttcgtggaggacaccccgctggccgacctgtgccacgccgaggagagcgga
ggagggacgtctctggccctggccctgctgccccgcagcggaaacatcgccctgctgcag
atggacgcccgcctccaccaggaccacttggacgctttaatcgaggcggccatgacggcg
tgcaaaggcctcggcgaggtcctggacggtgtggtgcgtcagcatctagaagaggtttcg
gttctgaccggagagtga
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integrated database retrieval system
