Puntigrus tetrazona (Sumatra barb): 122328663
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Entry
122328663 CDS
T08985
Symbol
hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122328663 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptet03019
]
122328663 (hbs1l)
Messenger RNA biogenesis [BR:
ptet03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
122328663 (hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
DO-GTPase2
AAA_22
GTP_EFTU_D4
Motif
Other DBs
NCBI-GeneID:
122328663
NCBI-ProteinID:
XP_043080419
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Position
23:complement(9971502..9994574)
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AA seq
683 aa
AA seq
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MSRHRNVRGYNYDEDFEDDDMYGQSVEDDYCISPATAAQFIYSRQDSRQTRHVETLEEAE
YEEEEEEMPTSPSVAGTLDPLQQGRLYSCLDQMRAVLGDSIPDSTLTQAALKYDCDPQRA
LDFILTEENTNTHAPPARTNPQPEPITTAAPQKAKARDAPESRVEAEVVPKVARMTVSGK
KQTMGFDVRSAEENGVVAPSVRRGPSPEVTAAPTAETPTKPLAVNEDSAAPTPTRPAGKS
KQQLNIRAELEKRQGGKPLLNLVVIGHVDAGKSTLMGHLLFLLGNVNKRTMHKYEQEAKK
AGKASFAYAWVLDETGEERDRGVTMDVGMTKFETDSKVITLMDAPGHKDFIPNMITGAAQ
ADVAVLVVDASRGEFEAGFEAGGQTREHGLLVRSLGVTQLAVAVNKMDQVNWQQERFQEI
TTKLGHFLKQAGFKDSDVFYIPTSGLSGENLTTRSKVADLTAWYTGPCLLEQIDAFKPPQ
RSVEKPFRLCVSDVFKDQGSGFCVTGKIEAGFIQTGDKVLAMPPNETCTVKGITLHDEAL
DWAAAGDNVSLTVTGMDIIKINVGCIFCDPKEPIRACSRFRARILLFNIEVPVTQGFPVL
LHYQTVSEPATIRKLVSVLHKSSGEVLKKKPKCLSKGQNAVVEIQTQRPVALELYKDYKE
LGRFMLRYVGSTIAAGVVTEIKE
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgtcacaggaatgtccgaggttataactacgacgaagactttgaggatgatgac
atgtatgggcagtcagtggaagatgactactgcatctctcctgccactgctgcacagttt
atatactcacgtcaagactcaagacagactcgacatgtagagaccctggaagaggcagaa
tatgaggaggaggaagaggagatgccaacatctccctctgttgcaggcacactagaccca
ctacaacaaggtcggttgtattcctgtttggatcagatgagagctgtactaggagattca
attcccgactccacactgactcaggcagctctgaaatatgactgtgaccctcaaagagca
cttgattttattctaactgaggagaacaccaatacacacgcccctccagccagaaccaac
ccacaacccgagcctatcaccacagctgcaccacagaaagctaaagcacgggatgctcca
gagagtcgtgttgaagctgaggttgtcccaaaggttgcccgcatgactgtgtcaggcaag
aagcagactatgggctttgatgtgcgaagtgcggaagaaaacggcgttgttgccccatca
gttcggagagggccgagtccagaggtcaccgctgcaccaaccgcagagaccccaaccaaa
ccattggctgtgaatgaagactctgccgcccctaccccaactcgaccagctggaaagagc
aaacagcagctcaacatccgtgctgaactggagaagagacaaggaggaaaaccgctactc
aacctggtggtcataggtcatgtagatgctggtaagagcactctcatgggtcatctgttg
tttctgctcgggaacgttaataagagaaccatgcataaatatgagcaggaggccaagaaa
gctggcaaggcctcattcgcttacgcgtgggtactggacgagacaggagaggagagagac
agaggagtgaccatggatgtgggcatgacaaagtttgagaccgactcgaaggttataact
ctgatggacgcaccaggacacaaagacttcattccgaatatgattacaggggcagcacag
gcagatgtggctgtgttagttgtagatgccagtcgcggggagtttgaggccgggttcgag
gcgggggggcaaacccgtgagcatggcctgctggttcgatcccttggagtcacgcagctt
gctgttgctgtcaacaagatggaccaggtgaactggcagcaggagaggttccaggaaatc
accacaaagcttggtcactttctgaagcaggctggttttaaggattcggatgtcttttac
atccctaccagcggcctatcaggagagaatctgactactaggagtaaggttgcagatctt
acagcctggtacactggaccgtgcctactggaacagatagatgcatttaaaccaccacag
aggtcagtggagaagcccttcaggctttgtgtctcagacgtattcaaagatcagggatct
gggttctgtgtgacggggaagattgaggctggcttcattcagacaggagataaagttctg
gccatgcctcctaatgagacctgcacggtaaaagggatcactctccatgatgaagcttta
gactgggcagctgctggtgataatgtcagtctaacagtaactggcatggacatcatcaaa
ataaatgttggatgtatattctgtgatcccaaggagcccatcagagcctgttcaagattc
agagcaagaattcttctttttaatatagaagttcccgtcacgcaaggctttcccgtactg
ttgcactatcagactgtaagcgagccggcgactattaggaagttagtcagcgtattacac
aagagcagtggagaagttctcaagaagaagccaaagtgtttgagtaaaggacagaatgct
gtggttgagattcaaacacaacggcctgtggctctggagctctataaggactacaaagaa
ctggggcggttcatgctgagatatgtgggctcgaccattgctgctggggttgtcacagag
atcaaagagtaa
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