Puntigrus tetrazona (Sumatra barb): 122328999
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Entry
122328999 CDS
T08985
Symbol
pdzrn3a
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ptet04121
]
122328999 (pdzrn3a)
Enzymes [BR:
ptet01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122328999 (pdzrn3a)
Ubiquitin system [BR:
ptet04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
122328999 (pdzrn3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
Sina_ZnF
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-TRAF
zf-C3HC4_4
zf-RING_5
Prok-RING_4
PDZ_Tricorn
zf-rbx1
RING_XB3-XBAT31
U-box
TRAF3_RING
zf-RING_6
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
122328999
NCBI-ProteinID:
XP_043081080
LinkDB
All DBs
Position
23:6292711..6315698
Genome browser
AA seq
1035 aa
AA seq
DB search
MGFDLDRFEGPVDPDLICKLCGKVLEDPLSTPCGHVFCAACALQWLSKVSSCPVQCQKIS
TKDLNRVLPLKNLILKLDIKCDHRERGCDRVMKLQHLPEHAETCEFSPVRCGNEGCDAVL
SLKDVASHMRDGCERRALEVCRDGCGLALTLEERSGGHSCLQALKAHSGLLQTKALSLEK
ELKRQSLSFGKRERSLLSKLSALHCELHITALTFQKKITEYKSRIDALSNSWVPLDKGEE
TRSLKVTLRRTSSGSLGFSIIGGRLCGEAEQQGDFSDGIYVSKIVENGAADKAGLHVHDR
IIEVNGRSLSVATHDQAVEAFQAAKDVMEVQVVRRTAPMTCKSPKATQGMDNSTQTNFTL
KTLKHVETSTPHTALLDSFLSPSLFQMARRDSPYPSDFHDGVQKDNGSRGVEYEEVDLQR
KTTQDKLGLKLCYKTDDEKSAIYISEIDPVGIAAKDGRVQEGDRIIQINGMNIQSHEKAV
TLLTKVESKNVTLLVARPESQDVGWLEEDRNILVDDLHMGKLKEQHHKVKEFTTSMLQQS
TNEEDGGTTDTATLLSNQHEKDSGVGRTDESTRNDESSEQDILGDDQNSLCETLPENHKK
YNYNHDTVESGDMHLSNDSFLSADNGDSGNFLGIPGTACERFRKLLELKSLVNGNSLQGF
LEHDATLYGKGFNVDCDDQEIQRLNEELLNIELECLSIIQAHRLQAEGSDQQAKKPSAKH
FFEQVHQDLINNQVDNEGFTSAYNTGESSWSLHPTLEPDSLESQRIVAGDKGKGSPMHRR
NSTTTCSKHNLSPIQEISPTKSLPGDPEVTNQGKRKQSKKKNPRKGLLTSLRHSSYKNTY
IPAHAQHYQSYMQLIQQKSAVEYAQSQVSLASLCKNTETTSTESRPKTGWKVKIRSDGTR
YITKRPIRDQLLKERALRIREERCSATTDDDAASELKLGRYWNREERKQHAAQAKEQRQR
RELIKQCCTESKEQAAALDDKKEPDIIQLSRKKMMKRRNKRIFDNWMTIQELLTHGTMST
DGTRLYNSFLSVTTV
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atgggctttgacctagaccgcttcgaaggtcccgtggatccggacctgatctgtaaactg
tgtgggaaagttttagaggatcctctgagcactccgtgcggacacgtcttctgcgccgcc
tgcgcgctccagtggctctccaaagtcagcagctgcccggtccagtgccagaagatctcc
accaaagacctgaaccgcgtcctgccgctaaaaaacctcatcctcaagctggacatcaaa
tgcgaccaccgcgaacgaggctgcgaccgggtgatgaagctccagcatctgccggagcac
gcggagacgtgcgagttctctccggtgagatgcgggaacgaaggatgcgacgcggtgctc
agcttgaaggacgtggcttcgcacatgcgggacggatgcgagcgccgggcgctggaggtc
tgcagggacggctgcgggctcgcgctcaccctcgaggagaggtccgggggtcacagctgt
ctccaggctctcaaggcgcacagcggtctgctccaaaccaaagcgctgagtctggagaag
gagctgaagcgccagtctctgagcttcggtaagagggagaggtctctgctctccaagctc
tccgcgctccactgcgagctgcacatcacggcgctcacttttcagaagaaaatcaccgag
tacaagagcaggattgacgcgctgtccaacagctgggtgcctctcgacaagggtgaagaa
acgaggagcctcaaagtcaccctccgcagaacatcatcgggatctcttggattcagtatc
atcggaggaagattgtgtggggaagcagagcagcagggggatttcagcgatggcatctac
gtatccaagatagtggaaaacggagctgctgacaaggccgggctgcatgttcacgacagg
atcatcgaggtaaatggaagaagcctttctgttgccacccatgatcaagcagtagaggcc
ttccaagctgccaaagacgttatggaggttcaggtagtgcgcaggacagcacctatgacc
tgcaagtctcctaaagcaacccaaggaatggacaacagtactcaaaccaactttacgctg
aaaaccttgaaacatgttgagacttcaacaccacatacggctttgctggacagttttctt
tcaccttcactgtttcaaatggcaagacgtgactcaccttacccctcagacttccatgac
ggtgtacagaaagacaatgggagtagaggagtggaatatgaggaggtggatctgcagagg
aaaaccacccaggataagcttggcctgaagttatgttacaagacggatgatgagaagtct
gccatttatattagcgagattgatccagtaggaattgccgcaaaagatggcagagtccag
gaaggagaccggattatccagatcaatggaatgaacatccagagccacgagaaggcagtg
acactcctgaccaaggtggagagtaagaatgtaacactcctagtggctcgaccagaaagt
caggatgttggctggttggaggaggatagaaacatcttagtagatgacttgcatatgggc
aaactgaaggagcaacatcacaaggtcaaggagttcactacaagtatgctgcagcagagc
acaaatgaagaagatggaggcactacagacacggctactttactatccaaccagcatgag
aaagacagcggtgtgggccgcacagatgaaagcactcgtaatgatgaaagctcagagcag
gacatcttgggggatgaccagaattccctgtgtgagactctcccagaaaaccacaagaag
tacaactataatcatgacaccgtcgaaagtggagacatgcacttaagcaacgactccttt
ctttcagctgacaatggagacagtggaaactttcttggtatacctggcacggcatgtgag
cgttttcggaaactgcttgaattgaaatctctggtgaatggtaacagtcttcagggattt
ctggagcatgatgccacactgtatggaaaggggtttaatgtagactgtgatgatcaggag
attcagaggcttaatgaggagttgctaaacattgagctggaatgcctgagcatcatacaa
gcacacaggcttcaggctgaaggtagtgatcagcaagccaaaaaacctagtgccaagcat
ttttttgagcaagtccatcaggacctcatcaataatcaagtggacaacgaaggctttact
agtgcttacaacactggagagagctcctggagtttacatcctactctggaaccagattct
cttgaatcccaaaggatagttgctggagacaagggtaaaggctctcccatgcatagacgc
aactcaacaacaacatgctccaaacataacctctctcccattcaggagattagccctacc
aagagtttacctggagatccagaggttacaaatcaggggaagagaaagcagagtaagaaa
aagaaccccaggaagggtcttctgacatccttacgtcattcctcctacaagaacacctac
atcccagcccatgcgcagcattaccaaagctacatgcaacttatccagcagaagtcagct
gtggaatatgcccagagtcaagtcagcttagccagcctgtgcaagaacacagaaaccacc
tccacggagtccaggcctaagacagggtggaaagtaaagatccgtagcgatggaacacgg
tatattaccaaaaggcccatcagagaccagcttctgaaggaacgagctttgcgcattcga
gaagaacgctgcagcgcaactacagatgacgacgcagcaagcgaactaaaactgggtcga
tactggaacagggaggagcgcaaacaacatgcggcacaagccaaagaacagcgccagcgg
cgggaactcataaaacaatgctgcacagagagcaaagaacaagcagcagcactggacgac
aagaaggagcccgatattatccagctcagccgtaaaaagatgatgaagaggaggaacaag
aggatatttgacaattggatgaccattcaggagctgctgacacatggcacaatgtcaaca
gatggtacaagactatataattcctttctttctgtgactacagtataa
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