Puntigrus tetrazona (Sumatra barb): 122330558
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Entry
122330558 CDS
T08985
Symbol
roraa
Name
(RefSeq) nuclear receptor ROR-alpha A isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ptet03000
]
122330558 (roraa)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
ptet03310
]
122330558 (roraa)
Transcription factors [BR:
ptet03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
122330558 (roraa)
Nuclear receptors [BR:
ptet03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
122330558 (roraa)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
122330558
NCBI-ProteinID:
XP_043083622
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Position
25:complement(11685291..11937054)
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AA seq
519 aa
AA seq
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MESPPDPASDPGNGVSEPVTPVRETPVNLETLRKAEHQAPVRRQSCSSTNRGISVTKKTH
TSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKNCLIDRTSRNR
CQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRLQQQQRDHQQQPGEAEPLTP
TYGLSTNGLTELHDDLSGYMNGHTPDGTKPDSGVSSFYLDIQPSPDQSGLDINGIKPEPI
CDFTPGSGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHMETCQYLREELQQMTWQAFL
QEEVESYQSKPREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVV
FVRMCRAFDPQNNTVYFDGKYAGPDVFKSLGCDDLISSVFEFGKNLCSMHLSEDEIALFS
AFVLMSADRSWLQEKVKVEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTLRALCSRH
TEKLTAFKAIYPDIVRAHFPPLYKELFGSDFEQSMPVDG
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggagtcccctccagatccagcgagcgacccgggcaacggcgtctcagagccggttacc
ccggtcagggaaaccccggtaaacctggagaccctccgcaaagctgagcaccaagccccg
gtgcgccggcagagctgctccagcaccaacagaggtatttcagtaacaaagaagacacac
acttctcaaatcgaaataattccctgcaagatctgtggagacaaatcatcaggcatccat
tatggcgtgataacgtgtgagggctgcaagggtttcttcaggaggagtcagcagagcaat
gcggcgtactcatgcccgcgtcagaagaactgcctgattgaccgcaccagccggaaccgc
tgccagcactgcaggctgcagaagtgtctggccgtgggcatgtcacgtgacgcggtgaag
tttggccggatgtcaaagaaacagcgggacagcctctatgcggaagtgcagaaacaccgg
ctccagcagcaacagcgggaccaccagcagcagcccggtgaggccgaacccctcactcca
acctacggcctctccaccaatggcctgaccgagctccacgatgacctgagcggctacatg
aacggccacacacccgacggcaccaagcccgactcgggcgtcagcagcttctaccttgac
atccaaccctcacccgaccagtccggcctggacatcaacggcatcaagccagagcccatc
tgcgacttcaccccaggctcgggcttcttcccctactgttccttcaccaatggggagaca
tcccccactgtttccatggctgagttggaacatctggcccagaacatttccaagtcccac
atggagacgtgtcagtacctgagagaagaacttcagcagatgacctggcaggcgttcctt
caggaggaggtggagagctaccagagcaagcccagggaagtcatgtggcagttgtgtgcc
attaaaatcacagaggccattcagtatgtggtggagtttgccaagcgcatcgacggcttc
atggagctctgtcagaatgatcagatagtgcttctcaaagcaggctctttggaggtggtg
ttcgtcagaatgtgccgtgcctttgaccctcagaacaacacagtctatttcgacggaaag
tatgctgggcctgatgtctttaagtcattaggttgcgacgacttgatcagctctgtcttc
gagtttgggaaaaacttgtgttctatgcacctctctgaagacgagatcgccctgttctcc
gccttcgtgttgatgtctgcagatcgatcctggctccaggagaaggtgaaggtggagaag
ctccagcagaagatccagctggccctccaacatgttctacagaagaaccacagagaggac
ggcatactgacgaagttgatatgcaaagtctccacgctgcgagccctgtgcagccggcat
acggaaaagctgacagcgttcaaagcaatatacccagacattgtccgtgcccacttcccc
cccttgtacaaggagttgttcggatcagactttgagcagtccatgcccgttgacgggtag
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