Puntigrus tetrazona (Sumatra barb): 122330634
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Entry
122330634 CDS
T08985
Symbol
thoc5
Name
(RefSeq) THO complex subunit 5 homolog isoform X1
KO
K13174
THO complex subunit 5
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122330634 (thoc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptet03019
]
122330634 (thoc5)
03041 Spliceosome [BR:
ptet03041
]
122330634 (thoc5)
Messenger RNA biogenesis [BR:
ptet03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
122330634 (thoc5)
Spliceosome [BR:
ptet03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
122330634 (thoc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
DUF2542
Motif
Other DBs
NCBI-GeneID:
122330634
NCBI-ProteinID:
XP_043083753
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All DBs
Position
25:2579347..2594453
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AA seq
705 aa
AA seq
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MSSDAVKKRKPKVIRNEAGTPETKRGRGEGDQVTYPAGPHLIGQRKLITAKNQDVRVYNE
EMELEGRDPQQDYMLYKDTCAALAKLMAEIQELKSGGAKVGSVEIEERRRQCSAHFITLK
KLNRLAHMRLKKGRDQTHEAKQRVDVLHLQLQNLLYEVMHLQKEISKCLEFKSQHEEIEL
VSEKEFFQEAPAEISRPNVTRDDHHQLTLARLDWELEQRKRLAEQYKMSLARKEKIQKAI
EQKREYLSSLQPGLQNIMQASLPVQEYLSMPFEQMQKQAEVAHHLPPPLYVLLVQVAAYG
QACDKTLTVSISGDVDEAKALSRPPEDSQDDESDSDAEEEQQNTKRRRATVGVQLDDKRK
EMLRRHPLSLCVDLKCKDSSVLHLFFYYLMNLNILTVKTKVSTTTDLSGAVSAGELLNSE
SLLNCLYASDHGKETPNPANRYQFDKVGITTFEDYVSDLGHPFVWVQKLGGLQFSSDSAQ
SELSGSALSASHMERTMKLLRGRLQARLALHKQFSSLEHSIIPVSSECQHLFPAKVVSGL
TRWTMMSYQEFTELGFVQHVLKAGLVRETDLFFMAIVERGTARLLAAVVVNPRYPEVMPL
FSLSLHWKGERSGRADDNLRAMESEVNVFRTELQGPRPGLQLLTNQIQRLCVCLDVYLET
ESQVCDGSEGPKEFPREKMCLRTARGPSRLKPFKYNHPQGFFSHR
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccgacgctgtgaagaagagaaagccgaaggtcatccgaaatgaagcaggaacc
ccagagaccaagcgaggccgaggagaaggcgatcaggtcacgtatccagccggacctcat
cttatcggacagaggaagctgattacagcaaaaaatcaggatgtccgtgtgtataatgaa
gagatggagttggagggcagggacccacagcaggactacatgctgtataaggacacgtgt
gctgctctggccaaactgatggcagaaatacaggagctgaaatccggtggcgccaaagtc
ggaagcgtagagatcgaggagagacgcagacagtgcagtgctcatttcatcaccctgaag
aaactcaaccgcctggcgcacatgagactgaagaaaggcagagatcagacacatgaggcg
aagcagcgagtggatgttcttcacttgcagctgcagaatctgttgtatgaggtcatgcac
ctgcagaaagagatcagcaagtgtcttgagttcaagtctcagcatgaggagatcgagttg
gtcagtgaaaaggagtttttccaggaggctccggccgagatttcccgccctaacgtcact
cgtgatgaccaccaccagctcacgctcgcccgcctggactgggaactggagcagagaaag
aggttggcggagcagtataagatgtctctggctaggaaggagaagatccagaaagccatc
gagcagaagagagaatatctcagcagccttcaacctggactacaaaacatcatgcaggcg
tctcttccagtgcaggagtatctgtcgatgccgttcgagcagatgcagaagcaggcagag
gtcgcccatcacctgcctcctcctctgtatgtgctgttggtccaggtggctgcgtacgga
caggcttgcgacaaaaccctgactgtgagcatcagcggagacgtggacgaggccaaagct
ctctccagaccgccggaggactcccaagatgatgaaagcgattcagacgctgaagaagag
caacagaacacgaaacgccggcgggcgactgtaggcgttcagctggatgacaaacggaaa
gagatgctgagacgccaccctctctcgctctgcgtggacctaaagtgtaaagacagcagc
gtcctgcatttgttcttctattatctcatgaatctcaacattctgactgtgaagactaaa
gtttccaccactacggatctgtcaggagccgtcagcgccggagagctgctgaactcggaa
agtctgctgaactgtctttacgcgtctgatcacggcaaagagacacccaaccctgccaac
cgctaccagtttgataaagtcggaatcactacgtttgaggattatgtatcagatctggga
catccgtttgtttgggtgcagaagttgggtggcctgcagttctcgtctgatagtgctcag
tcggagctgtcgggcagcgctctgagcgccagtcacatggagaggaccatgaagctcctg
cgaggaagacttcaggcccgtctggccctacacaaacagttcagctcgctggagcacagc
atcatccccgtctccagcgagtgccagcatctgtttcctgctaaagtggtttccggtctc
acgcgctggaccatgatgagctaccaggagttcactgagctgggcttcgtgcagcatgtg
ttgaaggccggtctggtgcgagagaccgatctgttcttcatggcgatcgtggagagagga
acagctcgtctgctggctgctgtggtggtgaacccgcgttaccccgaggtcatgccgctc
ttctctctctctctgcactggaaaggagagcgcagcggacgcgccgacgataacctgcgg
gcgatggagagcgaggtgaacgtgttccggaccgagctgcaggggccacgcccgggtctc
cagctcctgaccaatcagatccagcgcttgtgcgtctgtctggatgtgtacctggagacg
gagagccaagtgtgtgacggctccgagggaccaaaggagtttcccagggagaagatgtgc
ttgcgtaccgccaggggtcccagtcgtctgaagccctttaagtacaatcatccccagggc
ttcttcagtcaccgctga
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