Puntigrus tetrazona (Sumatra barb): 122332086
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Entry
122332086 CDS
T08985
Name
(RefSeq) LOW QUALITY PROTEIN: general transcription factor IIF subunit 1-like
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122332086
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptet03021
]
122332086
Transcription machinery [BR:
ptet03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
122332086
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
Motif
Other DBs
NCBI-GeneID:
122332086
NCBI-ProteinID:
XP_043085349
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Position
3:complement(12974708..12980093)
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AA seq
535 aa
AA seq
DB search
MTSLGSSSSSTTEYVVRVPKNTSKKYNIMAFNAGDKVSCSTWTQARMERDMSNRRIYGEE
ETQEGAAGSEFGKKQREEARRKKYGIVTKEFKVEDQPWILKVNGKAGRRFKGLKKGGVTE
NASYYIFTQCPDGAFEAFPVHAWYNFTPQAKHRTLTAEEAEEEWGRRNKVVNHFSIMLQR
RLREQERGEDDEEEKERRGKKKKKKGGRGGDLRIHDLEDDLEMSSDESDGSNGDDDEAKS
KAKKDKGPKGKGKKKKKKGSDLEGIEDSDDGDFEGLEVDYMSDESSSEEEEPEKTKPNKG
EDVPKGIDEMSDSEEESEEENKNEEEGKEEEEEEDGKKTPVQGEKKKKKDKDSSGESDSS
EDSDIEGEAASALFMVKKRTPPKRGGGRGSAGSSRTGSRPGTPSIDNAATSNTLRAAANK
LEQGKRQTTVPSSETPAAKRLKMEPSPQSSSGKSTPQPASGKSTPSSSDVQLTEDAVRRY
LIRKPMTTKDLLKKFQTKRTGLSSEQTVNVLAQILKRLNPERKNINDKMHFYLTE
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcgctgggtagcagcagttcctccacaacagagtatgttgtacgagttcctaaa
aacaccagtaagaagtacaacataatggctttcaatgctggtgataaagtcagttgttcc
acatggactcaggctcgtatggagcgtgacatgagcaacaggcgtatatatggtgaggag
gagacccaggagggggcagcaggcagtgaatttggaaagaaacagagagaggaagcacgg
aggaagaagtatggtatcgttacaaaggagttcaaggtggaggaccagccctggatcctt
aaagttaatggcaaggcaggaagaagattcaagggtctgaaaaaaggtggagtcacagag
aatgcttcctactacatcttcacacagtgtcccgatggggcctttgaggcgtttccagtg
cacgcttggtacaacttcacaccgcaggccaaacaccgcacgctcacagcagaggaggca
gaagaggaatggggaaggagaaacaaagtggtgaatcacttcagtatcatgcttcaacga
cgcctccgagaacaggagcgaggagaggacgatgaggaggaaaaggagagaagggggaag
aaaaaaaagaagaagggaggcaggggaggagacctgcgcatacatgaccttgaggatgat
ttggaaatgagcagcgatgagagcgacggcagcaatggagacgatgatgaagccaagtca
aaagctaaaaaggacaaaggccccaaaggcaagggaaagaagaagaagaaaaagggcagt
gacctggaagggatcgaggatagtgatgatggtgactttgaggggttggaggtggactac
atgtctgatgagagcagttctgaggaagaagagccggagaagaccaaacccaacaaggga
gaggatgtccctaaagggattgatgaaatgtctgacagcgaggaagagagtgaggaagaa
aacaagaatgaagaagaaggcaaggaggaagaagaggaagaggatggaaagaagacacca
gtgcagggggaaaagaagaaaaagaaagataaagacagcagtggcgagtccgacagctct
gaggacagcgatattgaaggagaggcagcttcagcactgttcatggtgaagaagcgcact
cctcctaaacgagggggtggtcgtggctcagcaggtagttcaagaacaggaagtcggcct
ggcacaccttctattgacaatgctgccacttccaacactctccgtgccgctgccaacaaa
ctggagcaaggtaagcgtcagacaactgtgcctagctcagagactccagcggccaagagg
ttaaagatggagcccagccctcagagctcttcagggaagagcacaccccaaccagcatca
ggaaaatccactcccagctccagtgatgtgcagctgacagaggatgccgtgcgcaggtat
ctcatcaggaagcccatgaccactaaagacctgctgaagaagttccagactaagcgcaca
ggccttagcagcgagcaaacggtcaacgtgctcgcccagatcttgaagaggctcaaccca
gagaggaagaacatcaatgacaagatgcacttctacctcaccgagtga
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