Puntigrus tetrazona (Sumatra barb): 122332271
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Entry
122332271 CDS
T08985
Symbol
topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122332271 (topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptet03032
]
122332271 (topbp1)
03400 DNA repair and recombination proteins [BR:
ptet03400
]
122332271 (topbp1)
DNA replication proteins [BR:
ptet03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
122332271 (topbp1)
DNA repair and recombination proteins [BR:
ptet03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
122332271 (topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
ECT2_BRCT0
BRCT_TopB1_SLF1
Motif
Other DBs
NCBI-GeneID:
122332271
NCBI-ProteinID:
XP_043085497
LinkDB
All DBs
Position
Unknown
AA seq
1506 aa
AA seq
DB search
MSKDNKEAYIVKFVERNGQKSDLALQAYKAIVELQSEKYVQTLGEEAALELDHNDKSLFV
FSDFTSNAFDHCRRLGCRIVSPLVVLFCLQKQRCVPKAEQPVYNMAMADVTVSCTNLDKE
ARSEVMDLVQLMGGRVYRDLNVSVTHLVAGEVGSKKYLVAASLGKPIFLPSWVKACWEKS
QDSVFHHSELNMEDYQCPVLKGCTVCVMGLSTVERKEVQRLCDQNGGKYTGQLKMNECTH
LIVSEPTGQKYEFARKWNVYCVSLHWLFDSIEKGFCQDESRYVVERGKKRAEEKPGRPNT
STPTGPNRSKEEGPSLLGLSHISNISMNVNETALTTAGISHIETPDPVDSFDITVCRVDD
LLDGCKLYLCGLSGKKLEKLRRMVNSAGGLRFNQPSQDLTHIVMGEPDQGVKVFLDKATH
RPHIVTLQWLLDSFSHGSLLPEDAYFHPSFLPPAPAAVDMPAPHKAAPRASRPPVAPPPA
PSPGRQARAEEDLLSQYMENDQTVVELPQATNSTSSRQSVLLPELPPAVKDSTVVETSEG
GLFAGKRFILVGFGAEADAQLSELVMENSGKILVGRSRAVAHYAIVPLLGCDVEATVDEV
VTDTWLAMCVEQQCVLPLASHPLFTPVAVREGFSPLKDCVLSVSQFTGAERESLIQLAKH
LGASVQDYFVRTANQKKGMLASTHLVLQTPEGTKYQAAQKWGLPAVTIRWVLESARTGKR
ADEGRYLVDQPPTPERTEDSFVGASQKDPPPLRIFQRSPELPLLGPQNSAAITPLDMARF
QSRTVRSAVRKLRQEEEEQTDVATPGQEDAKGALQKDSSLQLDTPSRFLSRDKLFGPSFN
TKDVFDHLQTPGNKPQQSQGAETPLSEVIERNLKVAVANSNRSHVTSLAAMTASPQLGKE
PEPEVEQKSAAPLSGVVVCVSKKLSKKQSELNAVAASLGAEFRWSCDDSVTHYIYQGKVG
DNSKEYKAVKERRLHIVSQHWLQACADEQKHVSESLYPFTFNPKMSLTMSQMADSTQRSP
PLSTPRTRLRAFTENEETRFSPVDSITDLSTPQRVSVGEPEKDQTASTERNLTETLEMRE
SLQRQLQEIMSATKLTNGRRASSRLARTGSGGLDSPHTPDSLGRMGRRSRTLEALRMSRQ
VAVDLNTEPSQSEQIVWDDPTAREERAKLADNMQWPGSPSQHSETLTIIPPPLSDHTARD
SMTDSELVEMAAFEVIDAQLKPKVNASPADKNPEAPAFAFPTSLPQIEEKKEVKDPPRFL
LSSLNPQERIDYSHLIEELGGVVLEKQSFDPSCTHVIVGYPLRNEKYLAAMAAGKWILHR
SYLEACRAEGHFIEEEQYEWGSSSILDALPSINSQQKRLALAALRWRKILQGGSNKEGAF
GGWTVMLNIDQAREAGFRRLLQSGGAKVLPDPSPSLFKETTHLFVDFSRLKPGDVRVDVS
EAAVQGVRCLKPEYIADYLMQEPSPSMDAYYLPGAATNDLEKAQDTSSRKRKASGEMSTL
KKSRVR
NT seq
4521 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagacaacaaggaggcatatattgtgaaatttgttgaacgcaatggacagaag
agcgatctggctctccaggcctataaggcaatagtggaactgcagtcagagaaatatgtg
cagacgttgggtgaggaagctgctcttgagctggaccacaatgacaagtccctgtttgtt
ttcagtgacttcaccagcaatgcgtttgatcactgcaggaggctgggatgcagaatcgtg
agtcctctggtagtgctgttttgtctgcagaagcagagatgcgtgcccaaagcagagcag
cctgtgtacaacatggccatggctgatgtcaccgtttcctgcaccaaccttgacaaagag
gcacggagtgaagtgatggatcttgtccagctgatgggtggacgggtctaccgtgatctc
aatgtatctgttactcacctggtggcaggtgaagtagggagcaagaaataccttgtggct
gcaagccttgggaagcccatttttttgcccagctgggtgaaagcatgctgggaaaagtct
caggatagtgttttccatcactctgaactgaatatggaggactatcaatgtccagtactg
aaaggctgcacggtgtgcgtgatgggactctctactgtggagcgtaaagaggttcagagg
ttgtgtgaccagaatggaggcaaatacacagggcagctcaagatgaatgaatgtactcac
ctcattgtcagtgaacccacaggtcagaagtatgagttcgcccggaaatggaacgtatac
tgtgtgtcactgcactggctgtttgacagcatcgagaagggcttctgtcaggatgagagc
aggtatgttgtggagcgtggaaagaagagggcagaggagaagccgggaagacccaacacc
tccactcctacaggacccaacaggagcaaagaggaaggtccctcacttttgggattaagc
catatttccaatatcagtatgaatgtcaatgaaacggccctcaccacagcaggaatcagc
cacatagagactcctgatccagttgattcttttgacatcactgtttgtcgagttgatgac
ctgttggatggctgtaagttatatctatgtggcctatcaggaaagaaactggagaaactg
cggcggatggtgaactctgctggagggctgcgcttcaaccaacccagccaagacctgaca
cacatagtgatgggtgaaccagaccagggtgtcaaagtctttcttgacaaagccactcac
agaccccatatagtgaccttgcagtggttgctggacagtttctcccatggttccttgctc
ccagaggatgcctactttcacccctccttcttgcctcccgccccggccgctgttgacatg
cctgctcctcataaagctgcccctcgggcctccagaccacctgtagctcctcctcctgcc
cctagtccaggccgccaagccagagcagaggaagacctgctctcgcagtacatggagaat
gaccagactgtggtggagctgcctcaggccactaatagtaccagcagcaggcagagcgtt
ttgcttccagagcttccacctgcagtgaaggactccaccgtggttgagacctcagagggt
ggcctttttgcagggaagcgttttatcttggttggttttggagctgaggctgatgcgcag
ctctcagagctagtcatggaaaactctgggaagatcttggttggccgctcgagagctgtg
gcacattatgctatcgtgccactgctgggctgtgatgtggaggccacagtagatgaggtt
gtgacagatacttggctggccatgtgtgtggagcagcagtgtgttttgccacttgcctct
catcctctgttcactccagtagctgtgagagaaggcttctctcctctcaaagattgtgtg
ctgtctgtcagtcagttcactggagctgagcgggaatctctcattcagcttgccaaacat
ctgggagcgagtgttcaggattactttgtgcggactgctaatcagaaaaaaggaatgctg
gccagcactcatttggtactccagactcctgagggcacaaagtaccaggctgctcagaaa
tggggtctacctgcagtcacaatccgctgggttttagagtcagccagaacagggaagcgt
gctgatgagggacgatacctggttgaccagcctcccactccagagagaactgaggacagt
tttgtcggagcatctcagaaagacccaccaccacttcgcatctttcagcgctctccagag
ctcccactactgggcccacaaaatagtgctgccatcacccctctggacatggctcgcttt
cagagccgcactgtccgctcagcagtcaggaagttgagacaggaagaggaagaacagaca
gatgttgccaccccaggacaggaggacgccaaaggagccctgcagaaagactcttccctc
cagctagacactccttctcggttcctgagcagagacaaactcttcggaccgtcgtttaac
acaaaggatgtgtttgaccatttgcagactcctggtaataaacctcagcaaagtcagggg
gctgagacacctctgtcagaggtcattgagaggaaccttaaagttgcagttgccaacagc
aaccgcagccatgtcacaagtctcgcagccatgactgccagtccacaactgggaaaagaa
cctgaacctgaggtggagcaaaagtcggcagctcctctcagtggggtggtggtgtgtgta
agcaagaaattaagcaagaagcaaagtgaactcaatgcagtggccgcctcactaggggca
gaattcaggtggtcatgtgatgactctgtcactcactacatctaccagggtaaagtagga
gacaacagtaaagaatacaaagctgtcaaagagagaagacttcatatagtgtcacaacac
tggctacaggcttgtgcagatgagcagaagcatgtgtccgagtcactctacccttttaca
ttcaatcccaaaatgagcctcaccatgagtcagatggcagatagcactcagaggtcacct
cctctatccaccccccgcaccagactcagggcttttacagagaatgaggagaccaggttt
agtcctgttgacagcatcacagacctctcaacccctcagcgtgtcagtgtgggagagcct
gagaaagatcagactgccagcactgaaagaaatctcacagaaacacttgagatgagagag
agccttcaaaggcaacttcaagagatcatgtctgctactaaactgaccaacggtcgtcga
gcctcctcgcggttggccagaacaggctcagggggactagactcgccccacaccccggac
agcctggggcgaatgggaagacgcagccgcactttagaggccctacgaatgtctcgtcaa
gtagctgtggacctgaatacagagccttctcagagtgagcagatcgtgtgggacgatccc
accgcacgagaggagagagctaagctggctgataacatgcagtggcctggcagcccctct
cagcactcagaaaccctcaccatcatcccaccgcccctctccgaccacacagccagggac
tctatgactgactccgaacttgtagaaatggctgcttttgaagtcattgatgcacagctg
aagccaaaggtgaacgcatctccagctgacaagaaccctgaagcacctgcttttgctttc
cccacctcccttccacagattgaagaaaagaaggaggtcaaggatcctccacgattcttg
ctgtcttcattgaacccacaagaacgcatcgactacagtcacctcatagaggagctaggt
ggcgttgtattagagaagcagagttttgatcccagctgcactcatgtgattgttggttat
cctctgaggaacgagaagtatttggccgctatggcagcaggcaaatggattcttcaccgc
tcgtatctggaggcctgccgtgcggaaggacacttcatagaggaggagcaatacgagtgg
ggcagcagttctattctggatgctctcccatccatcaactctcagcagaagagactggca
ctggcagccctgagatggaggaaaatactacaaggcggctcaaacaaagagggtgcgttc
ggaggctggactgtgatgttgaatattgaccaggccagagaggctggattcagacggctg
ctgcagtctgggggagccaaggtgttgccagacccttccccttctctttttaaagagacc
actcacctgtttgtggattttagtcggttaaaaccaggtgatgttagagtggatgtcagt
gaagctgcagttcagggggtcagatgtctaaaaccggagtacatcgctgattacctcatg
caggagccttctccttcaatggatgcttactatcttcctggcgcagctacaaatgatcta
gaaaaagctcaagatacatcgtcacgcaaacgaaaagcctctggggagatgtccacattg
aagaagagccgcgtgagatga
DBGET
integrated database retrieval system
