Puntigrus tetrazona (Sumatra barb): 122332481
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Entry
122332481 CDS
T08985
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain
KO
K06237
collagen type IV alpha
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet04382
Cornified envelope formation
ptet04510
Focal adhesion
ptet04512
ECM-receptor interaction
ptet04518
Integrin signaling
ptet04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122332481 (col4a2)
04518 Integrin signaling
122332481 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122332481 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
122332481 (col4a2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
122332481 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ptet04147
]
122332481 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
ptet00536
]
122332481 (col4a2)
Exosome [BR:
ptet04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
122332481 (col4a2)
Glycosaminoglycan binding proteins [BR:
ptet00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122332481 (col4a2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
122332481
NCBI-ProteinID:
XP_043085727
LinkDB
All DBs
Position
Unknown
AA seq
1575 aa
AA seq
DB search
MGPKGSVGMEGVPGFNGADGVPGHPGPSGPRGKPGADGCNGTRGESGTSGLPGIDGGSGI
SGGPGMKGEKGDPLDLWIYMETLRGDPGPPGFPGLAGPTGNPGYRGVPGTQGYWGPNGIK
GFKGQKGESSKKIKGMKGELGETGEPGPPGPYSEVRTIPPEWQGEKGFKGSKGEAGDMGY
LPTKGETGVSGFPGQRGYPGRNGLPGPTGDTGLPGFPGNFGRKGERGEPGELTGPFGDDG
DTLGPPGPPGERGPIGNYGAKGVKGQPGPPGPPATEQQQVDLWGPEGPQGSKGGKGEAGE
PGNPAAEPGPPGVDGLPGFPGPPGPKGSLEEFFKGAPGSRGRPGSAGKKGPKGDHGPCDC
DVKSPPGPPGPPGDDGDIGMIGEWGQQGDQGEPGTTGVNGMPGFPGVRGSPGPKGIKGES
RFATQKGQHGDPGVPGVSGSPGVQGRPGLDGRNGEPGFQGPTGEGPVGEPGDKGYQGGDG
PPGLIGPKGQPGQVLRATKGLRGLPGDEGRAGVEGDQGLPGIPGDCSAQGEDQWSISVEC
IGDPGPPGERGQPGLPGLDGFPGLPGEKGSPGLFGELGAKGEKGQPGRGGPPGPRGFVGP
RGDLGFPGTKGVEGTPGLSGQPGLDGLLGGKGEHGEVLGASHGTAGDPGLPGQRGVTGLP
GDPGPQGHQGMEGMPGMIGLRGESGPPGLQGEIGTTGPPGTFGFPGQPGQVGPPGPSGKT
GEPGPSGESGDQGDPGFSGPTGIKGVTGEPGKFGLQGNPGSPGDQGQQGAFGIDGLTGLK
GSKGGQGMTGFPGMPGEHGFKGISGLKGTLGDPGHQGAKGYPGSPGLRGDRGLMGPPGEK
LDVYMTPHMKEVMKGAKGDHGKMGDSGFTGPRGTKGFPGFPGIEGKDGHPGKPSDTKGTA
GFPGVEGFPGQKGMPGYKGESGIEGFPGMPGPRGEKGKSGAYGRTGESGIKGIKGEFGPA
ISLPGATGLRGETGLPGPFGEKGLIGKTGDRGGPGFDGIEGMKGYAGEPGKVGLPGSDGL
QGFPGTQGQKGWPGVPGQAGTPGIQGQPGQKGFPGLKGIFGLDGLKGQKGIKGVAGSDRL
GPSGEPGAKGEKGETGISSTESGVPGKVGLKGFVGDPGNKGESGHPGAPGPQGQQGFSDI
KGVRGDYGYPGSQGLPGFPGPRGVPGDPSPFGAKGQKGIPGDFGFTGEKGVQGDAGHKGP
SGEPGVSGRKGEKGEPGMMGYPGRRGFEGDRGPVGPKGDTGPPGIPGLPGAKGLPPVPQK
LPGERGPSGLMGIQGPQGRNGNPGPVGPPGDAGVWGPKGEKGMPGLPGIPGNPGFRGDPG
QIGHPGLQGEEGTRGGPGSPGPIGMPGRSVSVGYLLVKHSQSEQIPMCPVGMSKLWDGYS
LLYFEGQEKAHNQDLGLAGSCLPRFNTMPFLYCNPGDVCYYASRNDKSYWLSTTAPIPMM
PVEETEIKPYISRCSVCEAPSVAIAIHSQDITIPQCPAGWRSLWIGYSFLMHTAAGDEGG
GQSLVSPGSCLEDFRTTPFIECNGAKGTCHYFANKQSFWLTSIEQTFQSSPISETLKAGQ
LLARISRCQVCMKNL
NT seq
4728 nt
NT seq
+upstream
nt +downstream
nt
atgggtccaaaaggaagtgtgggaatggagggtgtcccagggtttaatggagcagatggt
gttccgggccatcccgggccatctgggcctcgaggaaaaccaggggctgacggttgcaac
ggaacccggggagaatcaggaacatcaggccttccaggaattgatggtggatctggaata
tcaggtgggccaggaatgaagggagagaagggtgaccctttggatctgtggatctatatg
gaaacattaaggggtgatccaggaccaccaggttttccaggattagctggtccaactggt
aacccggggtacagaggagtgccaggaacccaaggttattggggtccaaatggcattaaa
ggttttaaaggacaaaagggtgagagcagtaaaaaaataaaaggaatgaaaggagaattg
ggtgagactggagagccgggcccaccaggaccttactcagaagtccgtacaatccctcca
gaatggcagggcgaaaagggctttaaaggttctaaaggtgaagcaggagatatgggctat
ttacctaccaaaggagagacgggtgtgtcagggtttccaggacaacggggatacccaggg
cgaaatggcttgccaggaccaacgggtgacactggactaccaggtttcccaggaaatttt
ggccgcaagggagaaagaggagaacctggagagctgacaggaccttttggtgatgacgga
gacaccctgggtcctccaggcccgccgggagagcgcgggccaatcggaaattatggtgct
aagggcgttaaaggacagccgggtcccccaggcccccctgccactgaacaacaacaagtg
gatttatggggtcctgaaggaccacagggatcaaagggaggcaaaggtgaagctggagaa
cctggtaaccctgccgcggagcctgggccacctggcgtcgatgggctgcctggatttcct
ggaccacctggacccaagggatcattggaagaattcttcaaaggtgcaccgggatcacgt
ggacgtccaggaagtgcagggaaaaagggaccaaagggtgaccatggtccttgtgattgt
gatgtaaaatccccgcctggtcctccgggtcctcctggtgatgatggggatattggcatg
ataggcgagtggggtcagcagggtgatcagggagagccgggaaccacaggtgtgaatggg
atgcctggtttccctggtgtaagaggatcacctggccccaaaggcataaaaggagaatca
agattcgctactcagaaaggacaacatggtgacccaggggtcccaggtgtaagtggctct
ccaggagtgcaaggaaggcctgggcttgacggaagaaatggtgaaccaggttttcaagga
cctactggggagggtccggtaggtgagcctggagacaaaggataccagggtggggatggt
cctccgggtctaataggtccaaaaggacaacctggtcaagttctcagagcaactaaaggt
ctaaggggtcttcctggagatgaaggacgagctggtgtcgagggagatcaaggattacct
ggtatcccaggagactgtagtgcacaaggagaagatcagtggagtatttcagtggaatgt
attggtgatcctgggccacctggagagagagggcagcctggacttccagggttagatgga
tttccaggactgccgggtgaaaaaggttcaccgggtctttttggagaacttggagccaaa
ggagaaaaaggtcaaccaggaagaggaggcccacctgggccaagaggttttgttggacct
cggggtgacttaggatttcctggcaccaaaggtgtggaaggaactccaggtctttctggc
caaccaggtttggatggtcttttagggggaaaaggtgaacatggtgaagttttaggagct
tctcatggcaccgctggagacccgggactgcctggacagaggggtgtcactggtcttcca
ggagacccaggacctcaaggacaccaaggaatggagggaatgccaggcatgattggcctt
aggggtgaaagtggtcctccaggtcttcaaggagagataggaactactgggccaccagga
acatttggctttcctggccagcctggtcaagtaggacctcccgggccatctggaaaaact
ggagaaccaggtccaagtggagaaagtggagatcagggagacccaggcttttctgggccc
acaggaataaagggtgtcactggagaaccgggaaaatttggtctacaaggaaatcctggg
tcaccaggagaccaaggacaacagggggcatttggtattgatggcctaacaggtttaaaa
gggtccaaaggtggtcagggcatgacaggtttccctggaatgcctggtgagcatggtttt
aagggcatttctggactgaaaggaacattaggtgatccaggacaccaaggtgcaaaagga
tatcctggcagtccaggtctaagaggtgacagagggttgatggggcctccaggtgaaaag
ctagatgtttatatgacaccacatatgaaagaggtcatgaaaggagctaaaggtgaccat
ggaaaaatgggagattctggcttcactggtcccagaggtacaaaaggttttccaggtttt
ccaggaatagagggtaaagatggacatccgggtaaacccagtgataccaaaggtactgca
ggtttccctggagtagaaggatttccaggccaaaagggaatgccagggtataaaggagag
tctggaattgaaggttttcctggaatgcctggacccaggggtgaaaaaggcaagtctggt
gcttatggacggactggagaatctggaatcaagggaataaaaggtgaatttggtcctgcc
atttctcttccgggagcaacgggactgagaggtgaaaccggcctgcctggaccttttggt
gaaaagggactcataggtaaaactggagacagaggaggtcctggttttgatggcatcgaa
gggatgaaaggctatgctggagaacctggaaaagttggactaccaggctctgatggccta
caaggtttcccaggaacccagggtcaaaagggctggcctggtgtgcctggacaggcagga
acccctggaatccaaggccaaccaggacaaaaaggatttcctggccttaaaggcattttt
ggattggatggcctaaaaggtcaaaagggtatcaagggtgttgcaggttctgacaggttg
ggtccttctggtgagccaggagcaaaaggagagaaaggagagactggcatctccagcaca
gagtctggtgtcccgggaaaggtgggattgaagggtttcgttggagatccaggaaataag
ggtgaatctgggcatcctggtgcaccggggcctcagggtcaacaaggattctctgatata
aaaggagtgcgaggcgactatggctatccaggttcacaaggacttccaggttttcctggt
cccagaggggtcccaggtgacccgtctccatttggagcaaaaggacagaaaggtattcca
ggtgattttggatttactggagaaaaaggagtccaaggggatgcaggacacaaaggaccg
tcaggggaacctggagtatcaggaagaaaaggtgaaaaaggagaaccgggaatgatggga
tacccaggaaggcgtggttttgaaggcgataggggccctgttggacctaaaggagatacc
ggacccccagggattcctggcttacctggtgccaaagggcttccaccagttccacagaaa
ctaccaggtgagagagggccgtctggtctgatgggtattcaaggaccacagggaagaaat
ggaaacccaggccctgttggacctcctggggatgcaggggtttggggtccaaagggtgaa
aaaggcatgccaggtcttcctggaataccaggaaacccagggtttcgtggagatcctgga
caaataggtcaccccggtcttcaaggcgaagaaggaacccgagggggccctggttcacct
ggtcctatcgggatgcctgggcgcagtgtcagcgttggctacctgctggtgaagcacagt
cagtctgagcagatccccatgtgccctgtgggcatgtccaagttatgggacggttacagt
cttctgtactttgagggacaggagaaggcccacaaccaagatcttggtctagccgggtcc
tgtctcccccgatttaacaccatgcccttcctgtactgcaatcccggagacgtgtgctac
tacgccagccgcaatgacaaatcctattggctgtccaccaccgcaccgattcccatgatg
cccgtggaggagaccgaaataaaaccatacatcagccgctgctccgtgtgtgaagctcca
tctgtggccatcgccatccacagtcaagatataacaatcccacagtgcccggcgggctgg
agaagtctctggattggctactcgttccttatgcacacggcagctggagatgaaggcggc
ggtcagtctctggtctccccaggatcctgtctagaagatttccgcacaactcccttcatc
gagtgtaacggggccaagggtacgtgccactatttcgccaacaagcagagtttctggttg
acatccatcgaacagaccttccagagttccccgatctctgagaccctaaaggccggtcag
cttttggcacgcatcagccgctgccaagtgtgcatgaagaacctgtga
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