Puntigrus tetrazona (Sumatra barb): 122332488
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Entry
122332488 CDS
T08985
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet04382
Cornified envelope formation
ptet04510
Focal adhesion
ptet04512
ECM-receptor interaction
ptet04518
Integrin signaling
ptet04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122332488 (col4a1)
04518 Integrin signaling
122332488 (col4a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122332488 (col4a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
122332488 (col4a1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
122332488 (col4a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ptet04147
]
122332488 (col4a1)
00536 Glycosaminoglycan binding proteins [BR:
ptet00536
]
122332488 (col4a1)
Exosome [BR:
ptet04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
122332488 (col4a1)
Glycosaminoglycan binding proteins [BR:
ptet00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122332488 (col4a1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
122332488
NCBI-ProteinID:
XP_043085744
LinkDB
All DBs
Position
Unknown
AA seq
1639 aa
AA seq
DB search
MRLPCVTVFLLAVSLSIDESTAKGGCSGSSCGGCDCSGVKGAKGEVGLPGLMGLVGFPGL
PGPEGPPGPMGPKGDSGEAGAPGLKGNRGPPGVAGFPGRPGIPGLPGLEGPPGPHGIPGC
NGTKGERGFDGIPGFPGVQGPPGIPGLKGVKGDPGGIIGAPIPQKGDKGFPGQPGSPGLK
GNPGQQGPVGPTGPTGPAGRPGEPGQKGEPGDRLTFEGEKGQKGEKGLTGPPGPPGTLVG
QESPGTTISGPKGETGSKGEKGERGSCAPHQPGMKGEQGPPGPIGKPGKDGQNGEKGDRG
FSGTPGFDGSKLGGKRRKRTTGIWRWSSWPSWSSWPPWSRRRDRLSRRERGAPGPPGRYI
PGPPGLPGSPGENGQKGDKGDDGQSLEGPRGADGQPGPPGPPGPIDKDCKIEKGSQGPPG
PPGLQGEIGQKGNQGETCTDCTVFGSPGLPGPSGPKGQQGYPGQAGSKGEKGVTGPPGPS
GIPGQDGSPGLMGAPGAHGEPGDVFVAPGLKGDKGLPGTTGDRGFPGVDGLPGKDGQPGL
PGTKGEPARFGIKGDRGLDGDPGFPGPPGERGPPGLPGIGRPGEPGEKGSAGLPGSPGNP
GLPGAKGEAGKIYSLPGPQGVPGPRGEVGRPGLQGDRGFPGERGISGFPGDKGDPGLPGI
GLPGPPGPKGYSGIPGPAGIPGEPGRPGQDGLPGRAGTPGQKGEPGRGLPGPKGVVGQPG
LPGFPGEKGNPGMPGVPGTEGRTGPPGLQGIKGTAGPPGARGAGGPPGPPGLGDPGPPGP
MGPPGGPGPLGRIGIKGDKGSQGLPGLDMPGPPGDRGSPGVPGIPGPKGLPGELGPPGRD
GFPGERGPKGEIGIMGTTGPPGHLGPVGNPGEPGPKGDPGLTGVRGVFGDQGPKGERGEP
GIQGPPGNMSDIDMVHLKGDKGDIGDRGDPGPTGERGFTGTPGDPGMPGKDGMPGSPGQQ
GQKGDPGVPGEPGQTGETGDPGARGDMGYPGSMGPKGIKGVGGSPGHPGFKGTDGSKGDK
GEPGPAGIGMPGPPGQKGNVGSPGFPGEPGLKGQKGTMGIPGNPGTQGAKGDTGLVGYPG
SPGKPGEKGVSGLPGSPGESGFQGRPGEPGLQGPPGQPGEKGEAGVDGIPGFVGERGEPG
IPGTGFPGSRGEAGSKGDKGNPGLPGINGSPGIPGIKGEKGLPGFPGDQGHPGERGLPGI
SMEGPKGDQGAQGQQGQKGVIGDPGPPGIPGSAGAKGEKGDVGFPGPQGSQGYKGDKGFT
GASGEPGLPGYNGPKGEMGPQGVPGFPGTKGEHGVIGPKGDGGDRGFPGLKGTEGPLDHL
GLHIYKGDPGLPGPQGPQGLIGIQGYPGQKGQQGVMGLQGLKGSDGTPGYNGHPGAKGEP
GQTGPSGPRGYPGPPGPSGFPGGIGPPGPASMDHGFLVTRHSQSIDIPVCPAGTTPIYDG
YSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEPMP
MSMAPVTGESIKPFISRCAVCEAPAMVIAVHSQTILIPPCPRGWDSLWIGYSFVMHTSAG
AEGSGQALASPGSCLEEFRSAPFIECHGHGTCNYYANSYSFWLATIEDNEMFSKPVPTTL
KAGNLRTHISRCQVCMKKV
NT seq
4920 nt
NT seq
+upstream
nt +downstream
nt
atgcggcttccatgtgtcaccgtttttcttctcgcagtttctttgagcatagacgagagt
acagccaagggtggatgctcgggctcttcatgtggtggatgtgactgcagcggtgttaaa
ggggcgaagggtgaggttgggctccctggtttgatgggcctcgtgggatttcctggattg
ccagggcctgagggccccccagggcctatgggacctaagggagattctggggaggcagga
gctccaggacttaaaggaaacagaggcccacctggtgtggctggtttcccaggacgtcca
ggtattccaggtcttccaggtctagaaggtccaccaggacctcacggaatcccaggatgc
aatggaacaaagggggagcgcggttttgatggaattccaggtttcccaggagtgcaggga
ccaccgggtattccaggtttgaagggagtaaagggagatccaggtggtattattggagca
cccatccctcaaaaaggagacaagggttttccaggacaacctggttcaccaggactaaaa
ggaaatcctgggcaacaagggccagtcggcccaactggaccaactggacctgctggaagg
cctggtgaacctggccaaaagggagagccgggtgacaggctgacgtttgagggtgagaaa
ggacaaaagggagaaaaaggtttaactggtccccccggtccaccagggacattagtggga
caagaaagccccggcacaaccatttctggaccaaagggtgaaacaggctctaaaggagag
aaaggtgaaaggggctcctgtgcaccacatcaacctggaatgaaaggtgaacaaggacca
ccggggccaatcggtaaaccagggaaagatggacagaatggagaaaagggtgatcggggc
ttctctggtactcctggctttgatggctctaagttagggggaaaaaggagaaagaggacc
accgggatatggcggtggtcgtcctggccttcctggtcctcctggcccccctggagcaga
aggagagacaggttatccaggagagaacgtggagctcctggtccccctggcaggtatatt
cctggtcctcctgggcttcctggctcccccggagagaatggccagaagggagataaagga
gatgatggacagtctcttgaaggtccaagaggagctgatgggcagcctggcccccctgga
ccgccaggaccgattgataaagactgtaaaattgaaaaaggatctcaaggccctcctgga
cctcctggattgcaaggagagataggacagaaaggtaatcagggtgaaacatgcacagat
tgcactgttttcggatcaccgggtttgcctggtccttcagggccaaagggtcaacaaggt
tatcctggacaagcggggagtaaaggagagaagggtgtgacgggacctcctgggccttct
ggaattcctggtcaagatggctctccaggtttaatgggtgcccctggcgctcacggtgag
cctggtgatgtctttgttgctccagggctgaagggagataagggtttacctggcactact
ggagacagagggtttccaggtgttgatgggttaccaggaaaagatggccagccagggcta
cctggaacaaagggagagccagctagatttggtattaagggtgatcgcggcctggatgga
gatcctggttttcctggccctccgggtgagagaggacccccaggtcttccaggcataggt
cggcctggtgaacctggtgaaaaaggctcagcaggcctgcctggttcaccaggaaaccca
ggtttaccaggagctaaaggcgaagctggtaaaatttatagcttacctggacctcagggt
gtccctggacctcgtggagaggttggcagacctggtcttcagggtgacagaggttttcca
ggtgaacgtggaatttcaggatttccaggagacaaaggtgaccctggactgccaggaatc
ggcctgccggggcctccaggaccaaaaggatactctgggattccaggtcctgctgggatt
ccaggagagcctggtcgaccaggtcaagatggcttgcctggtcgtgcaggaacacctggg
caaaaaggtgaacctggcaggggtcttcctggtcctaaaggtgtcgtaggtcagccagga
ctgccaggatttccaggggagaaaggtaatcctggaatgccaggggttcctggaactgag
gggcgtactgggccacctggactacagggaatcaaaggtactgctggaccaccaggagct
cgtggtgcaggggggccgccaggtcctccagggcttggggaccctggaccacctggacca
atggggccacctggaggccctggacccctcggtcggattggtataaagggtgataaaggt
tctcaaggcctacctggtttagacatgcctggccctccaggagacaggggtagccctggt
gtcccaggtataccaggacctaagggtttgccaggggaactaggacctccgggtagggat
ggcttccctggtgaacgtggtccaaaaggagaaattggaatcatgggaacgacaggaccc
cctggacatttaggtcctgttggaaaccctggagagccaggaccaaaaggtgaccctggt
ttgactggtgtcaggggagtgtttggtgatcagggtcctaagggtgagagaggagagccg
ggcatacaggggccaccaggaaacatgagtgatattgacatggtgcatttgaaaggggac
aaaggagacattggagacagaggtgatcctggtcccaccggagaaagggggtttactgga
acaccaggagaccctggaatgccaggaaaagatggaatgccaggttcacctggacagcaa
ggtcagaaaggagaccctggagtccccggggagccaggacaaactggagaaactggagac
ccaggtgcaagaggagacatgggatacccaggttcaatggggccaaaaggtattaaaggt
gttggtgggtcaccgggtcaccctggatttaaggggactgatggctccaaaggagataaa
ggagagcctggtccagcaggaataggaatgcctggtcccccaggacagaagggaaatgtt
ggttcccccggtttccctggtgaacctggactgaagggacagaagggtacaatgggcatc
ccaggaaatcctggaactcaaggagctaaaggagacacaggattggttggttacccaggc
agtccaggaaaaccaggtgaaaaaggtgtcagtgggttgccagggtctccaggagaatct
ggatttcaaggacgtccaggtgaaccgggcctacagggtccaccaggtcaacctggggag
aaaggcgaagcaggggtagatggcattcctggatttgtaggagagagaggagaacctggt
atacctggcacaggttttccaggatcccgtggagaagctggcagcaaaggtgacaagggt
aaccctggtcttcctggcattaacgggagtccaggcattcctggaatcaaaggtgagaag
ggtctgcctggattcccaggggaccaagggcatccaggagagagaggacttccaggaata
tctatggagggacctaaaggggaccagggagctcagggacaacaaggacaaaaaggtgtg
attggtgacccaggcccacctggtatacctggcagtgctggagctaaaggagaaaaggga
gatgtgggcttccctggcccacaaggctctcaaggatataaaggagataaaggtttcact
ggtgcctctggtgagcctggattgcctggctataatggaccaaagggtgagatgggacca
cagggtgttcctgggttccctggtacaaagggtgagcatggagtaattggtcctaagggt
gacggaggtgacagaggattcccaggtcttaaaggtactgaaggccccctggaccacctg
ggcctccacatttataaaggagatcctggtcttccaggacctcagggtccccaagggctg
atcggaattcaaggctaccctggacagaaaggacaacagggtgtgatgggacttcagggt
ttaaaaggatccgatggaacacctggctataatggacaccctggggccaaaggagagccc
ggacaaaccggaccttctggccccagagggtaccctggacctccaggacctagtggtttc
cctggtggcatcggccctcctggccctgcatcaatggaccacggcttccttgtaacacgc
cacagtcagagtatcgatattccagtatgtccagcaggaacaacgccgatctatgatgga
tattcactgctttatgtacaaggcaacgagaggtcacatggacaagacctaggcacagct
ggtagctgcctaaggaagttcagcccaatgcctttcctcttctgcaacatcaacaatgta
tgtaacttcgcttctcgtaatgactattcctactggcttacctctcccgagccaatgccc
atgagcatggcccctgttaccggtgagagcatcaaaccctttatcagcagatgtgcagtt
tgtgaggctcctgcaatggtgatagctgtgcacagtcagaccatactgatcccaccctgt
cctcgtgggtgggattctctctggattggatactctttcgtcatgcacactagtgctggt
gctgagggctccggtcaggcgctggcctccccaggttcttgcctggaagagttccgctca
gctcccttcatcgagtgtcacggtcatggcacctgcaactattatgctaactcctacagc
ttctggttagccaccatagaggacaacgaaatgtttagcaaacctgtccccacaacgcta
aaggctgggaatctacgaactcacatcagcaggtgtcaagtgtgcatgaagaaggtatag
DBGET
integrated database retrieval system
