Puntigrus tetrazona (Sumatra barb): 122332540
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Entry
122332540 CDS
T08985
Symbol
setx
Name
(RefSeq) LOW QUALITY PROTEIN: probable helicase senataxin
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptet03021
]
122332540 (setx)
Enzymes [BR:
ptet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
122332540 (setx)
5.6.2.5 RNA 5'-3' helicase
122332540 (setx)
Transcription machinery [BR:
ptet03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122332540 (setx)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SEN1_N
AAA_19
Viral_helicase1
AAA_30
UvrD-helicase
AAA_16
AAA_22
nSTAND3
NAT10_TcmA_helicase
FapA
Motif
Other DBs
NCBI-GeneID:
122332540
NCBI-ProteinID:
XP_043085794
LinkDB
All DBs
Position
Unknown
AA seq
2298 aa
AA seq
DB search
MEKCLWCTTSLEAEGDAGIVPLLHRYSSGRLSEREMDSLNEDLGCCLECVVEYHRARDKV
PDLHKRLWEMEKARLVCLLETSLEKELEEDDIFIIEDDHEKPVSKISPTEFHDRLRSPLF
EVLKYPYLLCCRDLCDLAVKALCKLQDMNQPLMVFDKYQGIYLLLVHPNEQVRRWAIDTA
KTTKTVDRDSYYDLQEIFSSMFYIIELGISLDFPDLNQESYAGGIIQMLPSHLYDSQNKK
NYWLGICMLLTQLSAEAMDSLFMGQFNIPLCILNTMDGLKNEDSPASDPFWPALHCFMVI
LDRLGSKIWGQVDPNVAFQTITGADSYVAEIRNIQQKTTGRMVKTEPEYDDNIVTCSQMV
YDCYTSEKRIQASGSSNSSVSNNYVIYEDMQSLVTVLDSEMGQSMRVYGSTFLWFIPFVR
SIMELPELNASYISEVIHYLCDKIRENRHMLTGQTSVCDKVTEFFTRILIQVVELHSTEG
RMGILSRCAQKWVGEIVLCIIQADEPHGRPDRMGGVSSTSYNLGVIGSLPAPRGGLGAII
SDCMKLIRLLLREGKRNPSXSATHFLSLLNKQLRGVTNKRWNLTRTESDELQKCLLRVVR
SMPERPASPSSVVPPPGPPSVEAATNTVISRDSVLTLNQQQHEGQEAGPSRAGDESGGIK
VEPIWNYTNWNLDEDLCSGLDVIMKAKTEPLDPVSVSQPRPVVGLECIKPDMGKVQEIRS
RLNDNQNLSKIKAIAKQTPSESLKLAKEECGFGAEGEDDDEPLDIKRVRLSKSISKVESS
DSEVDCSVSGKTPNKSMGTSKDNTESSTIVISDDDDSDDERPNDIPRSPEDCVLSENPGR
DYDDLSESQVFEFETQQYVASSWDDSNFDASDLAKKPTSDKLLKPHGGEASPSSSETEPI
PDEDIERACQQAEDKIREQQQPQEPVDSCTSSKGSKVSSTAESWDKFAKPKPVKITKTTP
SDEKRHKKPLLIDALVQKVRRHPWKRSSTSQDSEEPSSSTTPSSCAASSSSPSCSSASSP
YFSAHSSHKTPAIVPPKKVRKVVEPESTAERLGLKKKERKAFELSQRSLDCVAKLRYHGQ
KVQVEPQLKTRRVRRAAKTSPQKCTVKGNKKLLGSQDIQFFRQSREKHQRPVTGAIMTVP
PKPAKANQPGDGHLTKSTVAGNEAGDAFPCPPPDPDHQQDNEKSASGTSSIDGGTGNNVR
IESKYFQASETTDINMKEKPAQEDNDEEWMFLTQMEPTDMELCSQMEQFEEENGEELFLT
QRDPVDMDIDTDSESDTPGPTLPTKPIRTPVSGNDDNLFVKPGMSPVSQKKAKPSTTKIY
TPSSRSASLVLEMEKGAKPPPVAKAKIPRLPPKTFQPLHSPQLPKPLPSQQAPYTPKLVT
SSKISSTSEPPSYKVYQRPEAPVNRPVPTMDPSPKFDLSILTQAILKWEYGMLENYKAFG
SPHDLCQLPLKKVPVQFPSYLEYFNTLYPLLLINAFEEMASEWLKEGRIKLNLTVQGIEY
SNRTASASFTANISPETDMKQLYPKEDDLVLLWLPDNTGSYALHEPSLQEQRPHFGYVSR
SSVSNRGQGSRPILNLTVQTRGNVSSVNSQPVLCEVVGSLISIFREFRALCLLRNGPMLR
PLLAPHVSYFTHTLDSPPDLDSPEFNRDQARAIACGLAMIKRTRKTPKFLLIHGPPGTGK
SKTIGGLLYKLLSSGTNSAAPSGNLHAKSRRTRVLLCAPSNAAIDCLMKKVILIFKEKCR
NINAPQGNCGDINLVRLGSERTISKSLKPFSLDHQTKARAQRAQQSVETDVHRRKEQLDK
SIDNLSQRCAKTKKDSSEFQKLMEEKLQLMKAREGLSRQIKECRSRRQESQAVVLQNAHV
ICCTLSTSGSIVLENAFRRLGHEPFSCVIIDEASQAKETETLIPMLYRCPAVILVGDPNQ
LPPTVVSQKAKEFGYDKSLMARLCKSLYQSNPQHSPILLLSVQYRMHPDICQFPSKYIYN
SALKDDCETAQKRCSLSWPFKPYKVFDVKDGIEKKERDSFSNHKEVKLVVLLLKLLGEKQ
SVRVGVITPYNAQKQRILEAVRSSGINKQLQVEVDTVDGFQGREMDCIIVSCVRASSEMG
SIGFVGNRQRMNVTITRARFSLFILGHIRTLKEQSDWGALIEDASMRKTIVRTIQKDFER
DARQILKPEREPPTRSFSYPPIGTGSASNTSVTHAPVETDPAPTARPQPDASHAPVPRLI
PLECLNNPRMSDRPTDPRFADRRPMREQRPDRDGRGLPESRHSTPRANSYDSDSRSSRQS
SRYSSKHRGSSPSRSYRR
NT seq
6897 nt
NT seq
+upstream
nt +downstream
nt
atggagaagtgtctgtggtgcaccacctctctggaggcggagggcgacgctgggatagtc
cccctgctgcatcgctacagctccggacggctgtctgagagagagatggactctctgaat
gaagacctcggctgctgtctggagtgtgtggtggagtaccatcgagccagagataaggtc
cctgatctgcacaagcgtttgtgggaaatggagaaggctcgactcgtgtgtttgttggaa
accagcctggagaaggagttggaggaggacgacatcttcattatcgaagacgatcacgag
aagccggtgtcgaagatatcgcccacagaattccacgaccgtctccgttctccgctgttc
gaagttctgaagtatccgtacctgctctgctgccgtgatctgtgtgacttggcggtgaag
gccttgtgtaagttgcaggatatgaaccagcctttgatggtgttcgataagtatcaggga
atatatctgctgctcgttcatcccaacgaacaggtgcgccgctgggcaatcgatacggca
aagaccacgaagaccgtggacagggactcctactatgaccttcaagagattttctcctcc
atgttttatatcattgagcttgggatatctttggactttccagatttgaaccaagagtct
tatgcagggggcatcatacaaatgctcccctctcacctctatgattcgcaaaacaagaag
aactactggctgggtatctgtatgttactcacacagctcagtgcagaggcaatggactct
ctgttcatgggacagtttaacatcccgctttgcatacttaacacaatggatgggttaaaa
aatgaggatagcccagcttctgacccattctggccagccctccactgttttatggtcatt
ctggaccgacttggttctaagatctggggtcaggttgaccctaatgtagcattccagacg
atcaccggcgcagacagctatgttgcggaaattagaaacatccagcaaaaaaccacgggc
aggatggttaaaacagaacctgaatatgatgacaatatagtgacctgcagtcagatggtg
tacgactgttatacctcagaaaaacgcatccaagcatctggttcatctaacagtagcgtt
tccaacaactatgtgatctatgaggatatgcagtcgctggtcactgtgcttgattctgaa
atgggccagagcatgcgtgtatatggaagcacttttctgtggttcattccattcgtccgt
tccataatggaacttccagagctcaacgcttcctatattagtgaagtcatccactacctt
tgcgataagatacgagaaaatcggcacatgttaacggggcagacaagtgtgtgcgataaa
gtgactgagttcttcactcgtatccttattcaagttgtggagctgcactctactgaggga
cgaatgggaatactttctcgctgtgcccaaaagtgggtgggagagattgtcttgtgcata
atccaagcagatgaaccacatggacgaccagacaggatgggtggagtcagttcaacctca
tacaaccttggggtaattggaagcctgcctgcacctagaggaggcttaggtgccataatt
tctgactgcatgaaattgattagactgctgctgagagaaggaaaaagaaatccatccnca
agtgcgactcactttttgagtttgctcaacaagcagttgcgtggagttacaaacaaacga
tggaatctaacacgtactgaatctgatgagcttcagaagtgtttgttaagagttgtccgg
tcgatgccagaaagacctgcttctccaagctccgttgttccaccaccaggtccaccatca
gtggaggcagctacaaacactgttatttccagagactcagtgctaaccctaaatcagcaa
caacatgagggccaagaggcaggtccgagcagagcaggagatgaatctggtggtatcaaa
gtggagccaatttggaattatacaaattggaacttggatgaggatttgtgtagcggtctt
gatgttatcatgaaggctaagacggaaccccttgacccagtatcagtttcacagccgaga
ccagttgtggggttggaatgcattaaaccagatatgggaaaagttcaggaaattcgatcc
agactaaatgacaaccagaatttgtcaaagatcaaagccattgccaaacaaacacctagt
gagtccttaaaattggctaaagaggaatgtggttttggtgctgagggagaggatgacgat
gaaccccttgatatcaaacgtgttcgtctatcaaaatccatctccaaagttgaatctagc
gactctgaagttgactgtagtgttagtggaaaaactcctaacaagtccatgggtacctca
aaggataacacagagtccagtaccattgttatctctgatgatgatgattctgatgatgaa
aggccaaatgacatcccaaggtctccagaagattgtgtcttgtctgagaaccctggtcgt
gattatgatgatctcagtgaatcgcaggtctttgagtttgagacccagcaatatgtggcg
tcttcctgggatgattccaactttgatgcatcagacttggcgaagaagccgacatcagac
aaactgctcaaaccacatggtggtgaagcgtctccatcaagttcagaaactgaaccaatt
cctgatgaagacattgagagggcttgtcagcaagcagaagataaaatcagagaacaacag
cagccacaagagccagtggattcatgtacgtcgtcaaaagggtccaaagtttctagtact
gcagaaagctgggataaatttgccaaacctaagccggttaaaatcacaaaaaccactcca
tctgatgagaaacgacataaaaagccgttgttaattgatgcccttgttcaaaaagtcagg
cgccacccctggaaacgcagctccacatctcaggactcggaggaaccttcctcttcaact
actccatcctcatgtgcagcatcatcttcctctccgtcctgcagctctgcttcctctcct
tatttttctgcacacagttcgcacaaaaccccggcgattgttcccccaaagaaggtgcgt
aaggttgtcgagccggaatcgacagcagagcgattgggattaaaaaagaaggaacggaaa
gcatttgaactttctcagcgctcccttgattgtgttgctaaactgaggtaccatggtcag
aaagtgcaggtggaaccacaactgaaaactagacgggtgcgtcgggctgctaagacctct
ccacagaaatgtaccgtaaaaggcaacaagaaacttctggggtcacaagatattcagttt
ttcaggcaaagtcgtgagaagcatcagaggccagtgacaggggccatcatgacagtacct
cctaaaccagcaaaggctaatcagccaggtgacgggcacttaacaaaatctacagttgca
ggcaacgaggctggtgacgcctttccctgtcctcctccagatcctgaccatcagcaggat
aatgaaaagtctgcatcaggaaccagttctatagatggtggcactggaaataatgtgaga
atagaatccaagtacttccaagccagtgaaaccactgatatcaacatgaaagaaaaacct
gctcaagaggataatgatgaagagtggatgttccttactcagatggaacccaccgacatg
gaactgtgctctcaaatggagcagtttgaggaagaaaatggcgaagaactatttcttacc
cagagagatcctgttgacatggatattgatacagatagcgagtcggataccccagggcca
accttgccaactaaacctattcggactcctgtcagtggaaatgatgataatttgtttgtg
aagccaggtatgtcacctgtgtctcagaaaaaagccaaaccctctacaacaaaaatatac
actcccagctcccgcagtgcctcacttgtccttgaaatggaaaaaggagccaagcctcct
cctgttgcgaaagcgaagattccccgactgccgccaaagacatttcaacctctccattct
ccacaacttccaaagccacttccttcacaacaagctccatatactcccaagttggtaact
agctctaaaataagctccacctcggagccaccatcttacaaggtataccaaagacctgag
gctccagttaacagaccagtacccacaatggatccaagcccgaagtttgacctttcgatc
ttgactcaagcaatccttaaatgggaatacgggatgcttgaaaattacaaagcttttggg
agtccacatgatctgtgccagctaccgctgaagaaagtgccagttcagtttcctagctac
ctggagtacttcaacactttgtaccccctgctgctaattaatgcatttgaagagatggcg
agtgaatggctcaaagagggcagaatcaagcttaacctaacagtccagggtatagaatac
agcaatcgcacagctagtgccagcttcactgcaaacatttctccagaaactgatatgaaa
caactgtacccaaaagaagatgaccttgtgctactttggttgcctgacaacactgggtca
tatgctctacatgagcctagtttacaagaacaacgtcctcattttggctatgtgtctcgg
tccagtgtgtccaacagaggtcaaggttccaggccaattctgaacttgactgttcagaca
cgtggtaatgtgtcttcagtgaattcccaacctgtgctctgtgaagtcgttgggtcattg
atcagcatattccgggagttccgtgcgctgtgtttgctgcggaatggaccaatgttgcgt
cctcttcttgctccacacgtgtcttattttacgcacactctggatagcccaccggacctg
gattcaccagagttcaacagggaccaagcaagagcaatagcttgcggtcttgccatgata
aagagaacacggaagaccccaaagtttcttctcattcatggtcctccaggaactgggaag
agtaaaacaattggtggcctgttgtacaaactactatcttcgggtactaacagtgctgct
ccttctgggaaccttcacgcaaaatctcgacgtacaagagttcttctttgtgcaccctct
aacgctgcaatcgactgtctgatgaagaaagtcattttgatatttaaagagaaatgccga
aacatcaacgcacctcaaggtaactgcggtgatataaacctggtgcgactgggaagtgaa
aggaccatatcgaagtcactaaaacctttcagcctcgatcaccagactaaagctagagca
cagcgagcccagcaatctgtagaaacagacgtacacaggcggaaggagcaactggacaaa
agtattgataatctctcccagagatgtgcaaagaccaagaaggattcttctgagttccag
aagttgatggaggagaagttgcagcttatgaaagcgagggagggactgagtcggcagatt
aaagagtgtcggagcaggcgacaggagagtcaagctgttgtgctgcaaaacgctcatgtg
atctgctgcacgctcagcaccagtggaagtattgtcctcgagaatgccttccgtcgtctc
gggcacgaaccgttcagctgcgtcatcatcgatgaggctagccaggctaaagaaacggag
actctgattcccatgctgtaccgctgtcctgctgtaatacttgtcggtgatcccaaccag
cttccaccaaccgttgtctctcagaaagcaaaggagtttggctacgacaaatctcttatg
gcaaggttatgcaaaagcctttatcagtcaaacccacagcactctcccatcctgctgctc
agcgtgcagtaccgcatgcacccggacatctgccagttcccctcaaagtacatctacaac
agcgctcttaaggacgactgcgagactgctcagaaacgctgctccctcagctggcccttc
aagccctacaaagtgttcgacgtgaaggatggaatagagaagaaggagagagattcattt
tccaatcacaaagaagtcaagctggtcgtgctgcttttgaagctgctgggtgagaagcag
tcggtgcgagtgggtgtcatcacgccctataacgcccagaaacaacgcatactggaagcc
gtcaggagctcaggcatcaacaagcaacttcaggttgaggttgatacagtcgatggcttt
cagggcagagaaatggactgcatcattgtgtcttgtgtgagagccagcagtgaaatgggc
tccattgggtttgttggaaatcgccagagaatgaacgtaaccatcaccagagccagattt
agcctcttcatactgggacacatacgcacactcaaggaacaaagtgattggggagcactg
atcgaggacgctagcatgcgcaaaactatcgtcagaacaattcaaaaagatttcgaaagg
gacgccaggcagattcttaaaccagaacgagagccgccgacccgcagtttctcttatccc
ccaattgggaccggaagcgcttcaaacacgtctgttacgcatgcgcctgtggaaacagac
cccgcccccacagcccgccctcaacctgacgcgagccatgcgcccgtgccgcggctgata
ccattggaatgccttaataacccacggatgagcgacaggcccacagacccacgttttgca
gaccgtcggccaatgagggaacagagacccgacagagatgggcggggcttaccggaatcc
cgccactcaacgcccagagctaattcatatgactcggactctagaagttctcgacagtct
tccagatactcttcaaaacaccgcggttcttcaccgtcgagatcatacaggagatga
DBGET
integrated database retrieval system
