Puntigrus tetrazona (Sumatra barb): 122333220
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Entry
122333220 CDS
T08985
Symbol
rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ptet03016
]
122333220 (rtcb)
Enzymes [BR:
ptet01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
122333220 (rtcb)
Transfer RNA biogenesis [BR:
ptet03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
122333220 (rtcb)
Prokaryotic type
tRNA splicing ligases
122333220 (rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
122333220
NCBI-ProteinID:
XP_043086683
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSRTYNDELQYLDKIHKNCWRIKKGFVPNMQVEGVFYVNDPLEKLMFEELRNACRGGGFG
GFLPAMKQIGNVAALPGIIHRSIGLPDVHSGYGFAIGNMAAFDMDEAEAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQSMFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHKGQICVMIHSGSRGLGHQVATDALVAMEKAMKRDKITVNDRQLACARITS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFNTTPDDLDMHVIYDVSHNIAKVEE
HMVEGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADKGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcacttacaatgatgagcttcagtacctggataaaatccacaagaactgctgg
aggatcaagaagggcttcgtgccgaacatgcaggtggaaggtgttttctatgtgaacgat
cctctggagaaactcatgtttgaggagctgagaaacgcctgtcgaggtggagggtttggt
ggtttcttgcctgctatgaagcagattggaaacgttgccgctctgccgggaatcatacac
cgctccatcggtttaccagacgtccactccgggtacggcttcgctatcgggaacatggca
gcgtttgacatggacgaggccgaggccgtggtgtctcccggcggcgtgggcttcgacatt
aactgtggcgtccgtctcctgaggaccaacctggacgagggagacgtccagccggtcaaa
gagcagctggctcagtccatgtttgaccacattcccgtcggagtcggatccaagggcgtc
attcccatgggagccaaagatctggaggaggctctggagatgggggtggactggtctctg
agggaagggtacgcctgggccgaagacaaggagcactgcgaggaatacggccgcatgctg
caggccgaccccaacaaagtgtcgtccaaagccaagaagagaggcctgcctcagctgggg
acgctgggcgctggaaatcactacgccgagatccaggtggtggacgagatctacaacgat
tacgctgctaagaagatgggcatcgaccacaagggtcagatctgtgtgatgatccacagc
ggcagcagaggcctcgggcaccaggtggccaccgatgctctggttgcgatggagaaggcg
atgaagcgggataagatcacggtgaatgaccgtcagttggcctgcgctcgtatcacgtct
cctgagggtcaggactatctgaagggcatggcagcggccggcaactacgcctgggtcaac
cgctcgtccatgaccttcctcacccgccaggccttctccaaggtcttcaacaccaccccg
gacgatctggacatgcacgtcatctacgacgtctcgcacaacatcgccaaggtggaggag
cacatggtggagggcaaacagaagacgctcctcgtgcacaggaaggggtcgacccgagcg
ttcccgcctcaccatccgctcatacccgtcgactatcagctgaccggccagcccgttctg
atcggaggaaccatgggcacctgcagttacgtgctgacgggcaccgagcagggcatgacg
gagacgttcggcaccacgtgtcacggagcgggccgggctctgtccagagccaaatccaga
cgcaacctggacttccaggacgttctggataaactggcagacaagggcatcgctatcaga
gtggcgtcaccaaagctggtgatggaggaggctcctgaatcctacaagaacgtcacggat
gtggtgaacacgtgccacgacgccggcatcagcaagaaggccatcaagctcagaccgatc
gccgtgattaaaggctga
DBGET
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