Puntigrus tetrazona (Sumatra barb): 122333356
Help
Entry
122333356 CDS
T08985
Symbol
col1a1b
Name
(RefSeq) LOW QUALITY PROTEIN: collagen, type I, alpha 1b
KO
K06236
collagen type I alpha
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet04510
Focal adhesion
ptet04512
ECM-receptor interaction
ptet04518
Integrin signaling
ptet04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122333356 (col1a1b)
04518 Integrin signaling
122333356 (col1a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122333356 (col1a1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
122333356 (col1a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ptet00536
]
122333356 (col1a1b)
Glycosaminoglycan binding proteins [BR:
ptet00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122333356 (col1a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
122333356
NCBI-ProteinID:
XP_043086861
LinkDB
All DBs
Position
Unknown
AA seq
1445 aa
AA seq
DB search
MFSFVDIRLGLLLAAAVLVVRGQGEDDISFGSCTLDGQNYNDKDVWKPEPCQICVCDSGT
VMCDEVICEDTSDCANPEIPDGECCPICPDDAYITTDSPVTGPQGPVGDPGPAGPPGRDG
TPGEDGLPGPPGPPGTSGLGGGSFLSQMAYGSDKSSGPALPGPPGPMGPRGLPGSAGSPG
PQGFTGPAGEPGEPGAPGPMGSRGPAGPPGKNGEDGEAGKAGRPGERGAAGPQGARGFPG
TPGLPGIKGHRGFSGLDGAKGDTGPAGPKGEPGVPGESGIAGAMGPRGLPGERGRPGPPG
PSGARGNDGNTGAAGPPGPTGPAGPPGFPGGAGAKGETGPAGGRGSEGPQGARGEPGNPG
PXGAAGSAGPPGADGSAGAKGSPGAAGIAGAPGFPGSRGPAGPPGPSGAPGPKGNNGDPG
AQGPKGEAGPKGEPGPVGPQGLAGPSGEEGKRGARGEPGGAGPVGPPGGRGAPGNRGLPG
SDGAPGPGGAPGERGANGAMGPQGATGEAGRPGEAGLPGSKGMTGAPGSPGPDGKAGPSG
APGQDGRPGPPGPAGSRGAPGVMGFPGPKGADGEAGKAGERGVAGPPGALGAPGKDGDIG
APGAPGPAGPSGEKGEQGSAGPSGFQGLPGPQGATGETGKPGDQGVPGEVGPHGPSGPRG
DRGFPGERGSNGPAGPTGPRGAPGSPGSDGAKGEPGAAGATGGVGPAGLQGMPGERGAGG
MPGARGERGDAGPKGPDGAAGKDGLRGMTGPIGPSGPSGAPGEKGESGAVGPAGVTGPRG
APGERGEGGPPGPAGFAGPPGANGQPGAKGETGDSGPKGDAGAPGPAGPVGAAGPQGPAG
ATGAKGARGGAGPPGATGFPGAAGRVGPPGPSGATGPPGPTGGAGKEGQRGARGERGPAG
RPGEAGAAGPAGPSGEKGSVGPDGPAGPAGAPGPPGVIGSRGIVGLPGQRGERGFGGLPG
PSGEPGKQGPTGPLGERGPPGPMGPPGLGGAPGEAGREGNAGHDGAPGRDGPPGPKGDRG
ETGNSGPPGAPGAPGAPGPMGPSGKTGDRGEAGPAGPAGPGGPAGARGALGPAGPRGDKG
EAGEAGERGMKGHRGFSGMAGVPGPPGPPGDQGPAGPSGPAGPRGSSGSNGVAGKDGMNG
LPGPVGPPGPRGRSGEMGPAGAPGLPGPPGPPGPSGIGEPFLPMPQGEKGPDPLRGGYRA
DDASVRDRDAEVDTSLKSLSQKIENIRSPEGTQSNPARMCRDLRMCHPDWKSGSYWVDPN
QGSPLDAIKVFCNMETGETCVSPSQNTIPMKNWYQSKNIREKKHVWFGESMPNGFQFQYG
SEGSDPEDVNIQLTFMRLMSNEAAQNITYHCKNSIAYMDESTGNLKKALLLQGSNDIEIR
AEGNSRFTYRVSEDGCTSHTGTWGKTVIDYKTTKTSRLPVVDIAPMDIGAPDQEFGVEVG
PVCFL
NT seq
4338 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatatccggttagggctgctgctcgccgcggcggtcctcgtggtc
agaggacaaggagaggatgatatctcattcggtagctgcacgttggacggtcagaattac
aacgacaaggatgtttggaagcccgagccgtgccagatctgcgtctgcgacagcggcacg
gtcatgtgcgacgaggtgatctgcgaggatacatcagactgtgccaatccagagattccc
gacggagaatgctgccccatctgccccgacgatgcatacattacgaccgatagtccagtt
actggtcctcagggtccagttggagatccaggtcctgcagggcctcccggcagagacggt
actcccggagaagacgggctccccggaccccccggtcctcctggaacctccggcctcggc
ggcggatctttcctctcccagatggcttacggcagtgataaatccagtggccccgctctc
cccgggcccccaggccccatgggtccccgtggcctccctggatctgcaggttcacccggc
cctcagggattcaccggccccgcaggcgagcccggagagcccggtgctcctggcccgatg
ggttctcgcggccccgctggtcctcctggaaagaacggagaagatggtgaagctggtaaa
gccgggcgtcctggagagcgcggagccgccgggccccagggtgctcgtggattcccagga
acccctggactccccggcatcaagggacacagaggtttctctggtctagatggagctaaa
ggagacactggacctgctggacctaagggagagcctggtgttcccggagagagcggcatc
gctggagccatgggtcctcgtggtttgcccggtgagagaggtcgccccggtcctcccggt
ccttctggtgcacgtggtaatgatggaaacaccggcgctgctggacctcctggacccacc
ggccccgctggccctcctggattccctggcggtgctggtgctaagggagaaaccggcccc
gctggaggccgtggttcagagggaccccaaggagcccgcggagagccgggtaaccctgga
ccgnctggagctgctggttctgctggacctcctggtgctgatggttctgctggtgctaaa
ggatctcctggtgctgctggtattgctggtgctcctggtttcccaggatctcgtggacct
gctggacccccgggcccttctggagcccctggccccaagggaaacaatggcgatcccgga
gcccaaggccccaagggagaggccggtcctaagggagaacctggccccgttggaccccag
ggcctggccggaccctctggtgaagaaggcaagcgaggagctcgtggtgagcccggtgga
gccggacccgtcggacctcccggaggccgtggtgcccctggcaatcgtggtcttcctggc
agcgacggagctcctggacccgggggggcccctggagagcgcggagccaacggagcgatg
ggacctcaaggagccaccggagaggctggtcgccccggagaggcaggactgcctggatcc
aagggtatgaccggagcccctggaagccctggacctgatggcaaagctggaccttctggt
gcacccggtcaagacggccgtcctggacccccggggcccgccggatctcgtggagctcct
ggagtgatgggattccctggacccaagggagctgatggcgaggctggcaaagctggcgag
agaggagttgctggaccccctggagctttgggcgctcctggcaaggatggagatatcggt
gctcctggagctcctggacctgctggcccatctggagagaagggagagcaggggtccgcc
ggtccttctggattccagggtctgccaggaccacagggagccaccggagagacgggcaaa
cctggtgatcagggtgttcctggtgaagttggtcctcatggtccttctggtccaagaggt
gacagaggtttccccggagagcgtggtagtaatggacccgctggccccaccggtcctcga
ggggcccctggttctcctggtagtgatggtgctaagggagagcccggagccgccggggcc
actggtggtgtggggcccgctggactgcagggaatgcccggagagcgcggcgccggaggc
atgcctggagccagaggagagcgaggtgacgctggacccaagggccctgatggagctgca
ggtaaggatggcctgcgtggaatgaccggccccattggaccttctggaccttctggtgct
cctggtgagaagggagagtctggtgctgttggacccgcaggagtgaccggtccccgtgga
gcccccggcgagcgtggagagggcggtcctcctggacctgctggttttgctggacctcct
ggtgctaacggacagcccggtgctaagggagagaccggtgactccggacccaagggtgat
gctggagctcctggacccgctggccccgtgggagccgccggccctcagggacctgctggt
gctactggagctaaaggagctcgtggtggtgctggacctcctggtgctactggattccct
ggagctgctggacgagtcggacctcccggtccttctggtgctacaggacccccaggcccc
accggtggtgctggtaaagaaggacagagaggagcccgtggtgagcggggccccgcaggt
cgccctggagaggccggagccgctggacccgcaggaccctccggagagaagggtagcgtt
ggccccgatggccctgctggccccgctggtgctcctggacctcctggtgttattggatct
cgtggtattgtcggtcttcccggacaaagaggagagagaggattcggtggtctccccgga
ccttctggagagccaggtaagcagggacccactgggcctttgggagagcgcgggcccccg
ggacccatgggccctcctggactgggtggagctcccggtgaagctggtcgtgagggtaac
gctggacatgatggagctcctggccgtgacggtcctcctggacctaagggagaccgcggt
gagacgggcaactctggccctcctggggcccctggggctcccggtgctcctggccccatg
ggtccatcaggcaagactggagatcgtggagaggctggtcccgctggtcctgctggtccc
ggcggtcctgctggtgctcgtggtgctctaggtcctgctggtcctcgaggagataaggga
gaagctggagaggccggagagagaggcatgaagggacaccgtggcttctctggaatggct
ggagtacctggacctcctggacctcctggtgaccaaggacccgccggaccatctggccct
gctggacctcgtggatcttctggctccaacggcgtggctggtaaggacggtatgaatggt
ttgcccggacccgtcggacctcctggaccccgaggacgctccggagagatgggacctgct
ggtgctcctggtcttcctggacccccaggtccccccggaccctcaggcatcggcgagccg
ttcctgcccatgcctcagggcgagaagggaccagatcccctgcgcggaggctacagagcc
gacgacgccagcgttcgtgaccgcgacgccgaggtggacaccagcctgaagtctctgagc
cagaagatcgagaacatccgcagccccgagggaacccagagcaaccctgcccgcatgtgc
cgagacctgaggatgtgccaccccgactggaagagcggctcttactgggtggaccctaac
cagggctctcctctggacgccatcaaggtcttctgtaacatggagaccggagagacctgc
gtcagcccgtctcagaacaccattcccatgaagaactggtaccagagcaagaacatccgg
gagaagaagcacgtctggttcggagagtccatgcccaacggcttccagttccagtacggc
agcgagggatctgatccagaggacgtcaacatccagctgaccttcatgcgtctgatgtcc
aacgaggctgctcagaacatcacctaccactgcaagaacagcatcgcctacatggacgag
agcacaggcaacctgaagaaggctctgctcctgcagggctccaacgacatcgagatcaga
gccgagggaaacagccgcttcacatacagagtcagcgaggacggctgcacgtcacacact
ggcacatggggcaagacagtcattgactacaagacaacgaaaacatctcgtctgccggtc
gttgatatcgctcctatggacattggtgctcccgatcaggaattcggtgtagaagttggc
ccagtctgcttcttgtaa
DBGET
integrated database retrieval system
