Puntigrus tetrazona (Sumatra barb): 122335279
Help
Entry
122335279 CDS
T08985
Name
(RefSeq) collagen alpha-1(XIV) chain isoform X1
KO
K08133
collagen type XIV alpha
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ptet00535
]
122335279
Proteoglycans [BR:
ptet00535
]
Extracellular matrix (ECM) proteoglycans
Others
122335279
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
DUF4959
Fn3_nematode
VWA_3
Big_5
Motif
Other DBs
NCBI-GeneID:
122335279
NCBI-ProteinID:
XP_043089040
LinkDB
All DBs
Position
Unknown
AA seq
1837 aa
AA seq
DB search
MRVRVLLILILTSVLITHAQVNVPRRLRFKELSSDTLGVSWKEPKGAFDSYRLLYSTDSG
DERELTVSKSQTKAVIAGFDRRKDYSVKITAVRGDQQSKALMGRYSGGSGSEVSDLRGQQ
DSSGPQENEISEVDVFTCRTPAIADIVILVDGSWSIGRINFRLVRMFLESLVRAFAVGSE
HTRVGLAQYSGDPRIEWHLNTHSTKEAVIDAVKNLPYKGGNTLTGLALTYILENSFKAES
GSRPDVPKIGILITDGKSQDDVLLPAQRLRDAGIELFAIGVKNADENELRAIASPPEDTH
VYNAADFSVMSSIVEGLTRSVCERVSELSREISGETDTSSTGPPNAPSNLVTSEVTARSF
RVTWTRATGPVEKYRVVYYSSSESRPEEAVVNGDQNSVVLRYLNSLTEYQITVFAIYSNA
ASEALRGSETTLALPTVSDLELHDITHSTMRARWRAAEGASGYMILYAPLTEGEVADEKE
VKVSDSVTQVELDGLTPATEYTVTIYALYGEEASDPMTAQETTLRLTPARNLRISDISHS
SAKLSWDTASRKVKGYRIVYVKTDAVETHKVEVGPVTTLLLRNLTSLTEYTVAIFALYDE
GQAEPLTDSFTTSEVPLPLNLRSRDVSTDSFRVTWQNAASDVSFYRLTWKPASGGETKEV
LINDNSNWFVITGLKPLTEYEVSLSAIYRDESESDLVEISETTVARTTTVATTTARTTTA
VQRLAIRNLQLSDVTTFSMRVSWDPLGPSVRQYRVSYVSTRGDRAEQTATVPSAQTSLLL
QPLLSDTEYRVSVSAVYSDGDGPPITRLARTLPLSAPSNLRVSEEWYNRFRISWDTPPSP
TMGYRIVYQPTSAAGRALETFVGDDVNTMLIVNLLSGTEYSVKVIATYTTGSSEALSGRA
QTLYLGVSNLSTFQVRTNSMCVQWQPHRHANLYRLVLQTPNGEKQEVKLSGSTSRHCFND
LTPNTQYTISIHAQLQDTEGPAVSTTQRTFPVATAPPTTPSTTAPPPTLPATKEVCRAAK
ADLVFLVDGSWSIGDDNFQKIVRFLYSTAGALDRIGPDGTQVAIAQFSDDARTEFKLSSY
DNKENLLDAIQRISYKGGNTKTGRAMQHVKDSVFSVVGGARRGVPKVLVVMTDGRSQDDV
LQVSQEIQTEGFIVFAIGFADADYGELVSIASKPSERHVFFVDDLDAFRKIEEKLITFVC
EAASATCPSVPMSGSTLPGFRMMEMFGLVEHQYSSVSGVSMEPGTFNSFSSFRLGSDSLV
TQPTRFIHPEGLPSDYTITMLFRLLPETPQEPFALWEVLNSSNEPLVGVILDNGGKTLTY
FNTDYNGDFQTVTFEGPDIQKLFYGSFHKLHIAVSKTSALVMVDCKPAGEKSVNAARNIS
TDGVEVLGRMVRSRGAKDNSAPFQLQSFDIVCSTSWARRDKCCELPSLRKEAECPSLPRA
CTCTQDSKGPPGPSGPPGGPGIRGARGDRGEPGPVGPVGPVGDAGVPGAQGPPGPPGPSG
RSIRGPLGAPGETGQKGDAGPQGLQGVPGSPGPAGRDGPPGPRGLPGQDGPQGRVGPSGT
IGGPGAPGAPGENGPPGPTGDQGPPGPPGPKGEKGERGEVQSTASVQAIARQVCEQLIQS
HMARYSSILNHIPSQPVSIRTVPGPPGEPGRQGSPGPQGEQGPPGRPGFPGSNGENGQPG
ARGPLGEKGEKGSPGVGVQGPRGPTGPPGAPGEGRTGSPGPSGRPGNPGSPGRPGIPGPV
GPPGPPGYCDQNSCLGYNVGEPDVDADLTDTDVPVVQLPPSSYQPYGPEAEDDDPYGSYT
SYYQPNYPPPRPVQPDDPVIEEGVEELRSPGMQRHTR
NT seq
5514 nt
NT seq
+upstream
nt +downstream
nt
atgcgggttcgagtgctgctgatcctgatcctcacatcagtattaatcactcatgctcaa
gtgaacgtgcccagaaggctgcgttttaaagagctgagctccgacacgctcggcgtgagc
tggaaggagccgaagggagcgtttgacagctacagactcctctacagcactgattcggga
gacgagcgggagctcacagtcagtaaatctcagactaaagcagtcatcgcaggcttcgat
cggaggaaagattacagcgtgaagatcacggccgtgagaggagatcagcagagtaaagcg
ctgatggggaggtactcggggggctcggggtcagaggtgagtgacctcaggggtcagcag
gactccagcggccctcaggagaatgagatcagtgaagtggacgtgttcacgtgtagaact
ccagccatcgccgacattgtgattctggtggatggatcgtggagcatcggccgcattaat
ttccgcttggtgcggatgtttctggaaagtctcgtcagggcctttgcagttggatctgaa
cacacacgtgttggtttggcacaatacagcggggatccacggattgagtggcatctgaac
actcacagcactaaagaagctgtgatcgatgctgtgaagaatctgccttataaaggagga
aacacactcacaggtctggctctgacgtatattctggagaacagcttcaaagctgaatct
ggatccaggcctgatgttcctaagattgggattctgatcacggatgggaaatcacaggac
gatgttcttcttcctgctcagagactcagagatgctgggatcgagctgtttgccatcgga
gtgaagaatgcggatgagaacgagctgagagccatcgcctccccgccggaggacacacac
gtgtataacgcggctgatttcagtgtgatgagctccatcgtggaaggactgacccgcagc
gtctgcgagcgtgtctctgaactcagcagagagatcagcggtgagacagatacgtcttcc
acggggccaccgaatgctcccagtaaccttgtgacctctgaggtcacggccaggagcttc
cgtgtgacatggactcgtgctacaggcccagtggagaagtacagagtggtgtattactca
tccagtgaatccagacccgaggaggcggtggtgaacggtgaccagaactctgtggtgctg
aggtatctgaactctctgaccgagtatcagatcactgtgttcgccatttacagcaacgca
gcgagtgaagctctgagaggcagcgagaccaccttggctctgccgacggtcagtgatctg
gagctgcatgacatcactcacagcaccatgcgtgctcgctggagggcagcagaaggggct
tctgggtacatgatcctgtacgcgcctctgacggagggcgaggtggcagacgagaaagag
gttaaagtgtctgactccgtgactcaggttgaactggacggtttaactcctgcgaccgaa
tacacagtgactatttacgccctgtacggagaggaggccagcgaccccatgaccgctcag
gagaccacactccgtctcactccggctcgtaaccttcgcatctcagacatcagtcacagc
tccgctaaactctcgtgggacacggcttctcgcaaggtcaaaggttaccgcattgtttac
gtgaagacagacgctgtggagacccataaggtggaagtgggtccggtcaccacgctgctg
ctgcgtaacctgacctctctgacggagtacaccgtcgctatctttgccctgtatgacgag
ggacaagcagaacctctgacagacagcttcaccaccagtgaggttcctctgccactgaat
ctccgcagcagggacgtgtccaccgatagtttcagagtgacgtggcaaaacgctgcatct
gacgtctccttctacaggctcacctggaaacctgcatcaggaggagagaccaaagaggtt
ctcatcaatgataactcaaactggtttgtcatcacgggtctgaagcctttgactgagtat
gaagtttctctgtctgcgatctacagagacgagtctgagagcgatttggtggaaatcagt
gaaactacagttgccagaacaacaacagttgcgacgacgaccgccagaacgactacagcc
gtacagcgcctggccatcaggaatctgcagctgagtgacgtgacgaccttcagcatgcgt
gtatcgtgggatccgctgggtccaagtgtgcgtcagtatcgagtgtcgtacgtcagcaca
cgaggagatcgcgccgaacaaacagcgacggttccctcggctcagacctctctgctgctg
cagcctctgctgtcggacactgagtaccgggtcagtgtctctgccgtctacagtgacggc
gacgggccgcccatcacacgccttgcccgcacactgccgctctctgctcccagtaacctg
cgagtgtctgaggaatggtacaatcgcttccgtatcagctgggacaccccgccctcaccc
accatgggctacaggatcgtctaccagcccacctcagcggccggccgtgcattggagacc
ttcgtcggtgatgatgtgaacaccatgctgatcgtcaatctgctgagcgggacggagtac
agtgtcaaagtcatcgccacctacaccacaggatccagcgaggccctgagcggacgagca
caaacactgtatctgggagtgagtaacctcagcaccttccaggttcggaccaacagcatg
tgtgtgcagtggcagccgcatcgacatgcaaacctgtaccgcctcgtcctgcaaacaccc
aatggtgagaaacaggaagtgaagttgagcggctccacatccaggcactgctttaatgac
ctgaccccaaacacacagtatactatcagcattcatgctcagctgcaggacacagaggga
cccgccgtcagcaccacccagagaacatttcctgtggccacagctccgcccaccacaccc
agcaccactgcccccccgcccactcttccagcaactaaagaagtgtgtcgagccgctaaa
gcggatctggtgtttctggtggacggatcgtggagtatcggagatgacaacttccagaag
atcgtccgcttcctgtacagcaccgccggagcgctggaccggatcggcccggatgggaca
caagtggctattgctcaatttagtgacgatgctcgcactgagtttaagctcagctcatac
gacaataaagaaaacctgctggatgccattcagaggatctcctataaaggaggaaacaca
aagacaggtcgggcaatgcagcacgtgaaggactctgtgttttcggtggtgggcggagcc
agaagaggtgtgccaaaagttctggtggtgatgacggacggccgttcccaagacgacgtg
ctccaggtttcccaggagatccagacagaagggttcatcgtgtttgccatcgggtttgcc
gacgccgattatggcgagctggtgagcatcgctagcaaacctagcgagagacatgtgttc
ttcgtcgacgacctggatgctttcagaaagatcgaagaaaaactcatcacctttgtttgt
gaagctgcatcagccacatgtccatcagtaccaatgagcggcagcactttaccagggttc
aggatgatggagatgtttggtctggtggagcatcagtacagcagcgtgagcggcgtgtcc
atggagccggggaccttcaacagcttcagcagcttcagactcggcagcgactcgctcgtc
acgcagcccaccaggttcattcatcctgagggtctgccgtcagactacaccatcaccatg
ctcttccgcctgctcccagaaaccccgcaggagccctttgcattgtgggaagtcctaaac
agcagcaacgagccgctggtgggagtcatcctggacaatggaggaaagactctgacttac
ttcaacacagattataacggtgacttccagacagtgacgtttgaggggccggacatccag
aagctcttctatgggagttttcacaagctgcacatcgccgtcagtaagacgtcagctctg
gtgatggtggactgtaaaccggcgggagagaagagcgtgaacgcagccagaaacatcagc
actgacggagtggaggtcctgggacggatggtgagatccagaggagccaaagacaactct
gctccgtttcagctgcagtcctttgatatcgtgtgcagcacgtcttgggctcgacgggac
aaatgctgcgagctgcccagcctgaggaaggaggctgagtgtccttctctcccgcgagca
tgcacctgcactcaggacagcaagggcccccccggcccctccggaccccctggaggcccg
ggcatcagaggagccagaggagatcgaggtgaacccggccctgtgggtcctgtaggtcca
gttggggacgctggtgttccaggtgctcaggggcctcccggtcccccggggcccagcgga
cgctccatcagaggccctctaggggctccaggtgagacgggtcagaagggcgacgctggt
cctcaagggctgcagggtgttcctggctctcccgggcctgcaggacgcgatgggcctcca
ggaccgaggggtctgccgggtcaagatggacctcagggtcgagtgggaccttctggaact
ataggcggtccgggagctccaggggcacctggggaaaatggccctccaggacccacagga
gaccagggtcctccggggccaccgggacccaaaggagagaagggtgagcggggcgaagtc
cagtccacagcttctgtccaagccatagccagacaagtgtgtgagcagctgatccagagt
cacatggcgcggtacagttctattctgaaccacattcccagtcagccggtgtcgatccgc
actgttcccgggccgccaggagagccgggccgacaggggtctccaggacctcagggagag
caggggccgccgggacggccgggattcccaggcagtaacggggagaacggtcaaccagga
gcccgaggacctctgggtgagaagggagagaagggcagtccaggtgtgggagtccaggga
cccagaggacccactggaccgccaggagctcctggtgaaggcagaacaggaagtccaggt
ccatctggtcgccctggtaaccccggcagtcctggcagacccgggattccaggaccggtt
ggtccgcccggtccacccggatactgtgaccagaattcctgcctcggctacaacgtggga
gagccggacgtcgatgctgacctcactgacacagatgttcctgtagttcaacttccgccc
agctcctaccagccgtacggccccgaggccgaggacgacgacccctacggctcctacacc
tcctactaccagcccaactaccccccgccgcggcccgtgcagcccgacgaccccgtgata
gaggagggcgtggaggagctgcgctcgcccggcatgcagcggcacacacgctag
DBGET
integrated database retrieval system
