Puntigrus tetrazona (Sumatra barb): 122336322
Help
Entry
122336322 CDS
T08985
Symbol
top3a
Name
(RefSeq) DNA topoisomerase 3-alpha isoform X1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03440
Homologous recombination
ptet03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122336322 (top3a)
03460 Fanconi anemia pathway
122336322 (top3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptet03032
]
122336322 (top3a)
03400 DNA repair and recombination proteins [BR:
ptet03400
]
122336322 (top3a)
Enzymes [BR:
ptet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
122336322 (top3a)
DNA replication proteins [BR:
ptet03032
]
Eukaryotic type
DNA Topoisomerases
122336322 (top3a)
DNA repair and recombination proteins [BR:
ptet03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
122336322 (top3a)
FA (Fanconi anemia) pathway
122336322 (top3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_GRF
Toprim
Zn_ribbon_Top1
Zn_ribbon_GRF_2
zf-C2H2_10
Motif
Other DBs
NCBI-GeneID:
122336322
NCBI-ProteinID:
XP_043089633
LinkDB
All DBs
Position
3:complement(15570494..15578533)
Genome browser
AA seq
1005 aa
AA seq
DB search
MNVLFRLLRVTIDSRFYRQISVSMIRRTQIKKVLCVAEKNDAAKGIAEIMSTGRSRRREG
YSVYNKIYEYDYHLFGQNVTVSMTSVSGHLLGLEFKAPFQKWHSCNPVLLFDAEVEKYCP
ENFIPIKLCTYIIQRTLEREVRQCQALVIWTDCDREGENIGFEIIDVCKAVKPNVQVFRA
RFSEITPNSIRRACETLTEPDINISDAVDVRQELDLRIGASFTRFQTLRLQKIFPESLSD
QLISYGSCQFPTLGFVVERFKAIQAFIPETFFKIKVVHEPNEEESVEFSWKRHRLFNHTA
CLVLYQMCMEDPMAKVISVTSKPKNKWRPLPLDTVELEKLASRKLRISAKETMKIAEKLY
TQGFISYPRTETNMFPQNLNLTTLVEQQTQDNEWGNFAQRILDSGGPTPRNGNKSDQAHP
PIHPTKYTHSLQGNEKRLYEFIVRHFLACCSKDAQGQEVTVEIEIAEERFSASGLTIIAR
NYLEVYPYDKWYNKVIPLYTADTTFQPTAIEMVEGQTSPPQLLTEADLISLMEKHGIGTD
ATHAEHIETIKSRMYVGLTADQRFLPGELGMGLVEGYNSMGYEMSKPDLRAELEADLKLV
SEGRKDKASVLSYHVAKYKAVFIESVRKAKKLDEALSNYLGPAQEITEQEQGQMEIPLPV
RKCPQCNRDMVLKKKKDSTRMFLSCMGYPACKAAVWFPDTVLEVSRDESICPTCRPHPVH
MLKFKFKRGSLPPMMPLEFVGCIGGCDETLREVLNLKYIRGGEADSGSRAHNGSGSNQNH
IPRTNSVPPPRVTPPAPRPPASLPPPRAAQPPASAQGGAIVCNCGQDAILLTVRKEGPNQ
GRQFYKCNTGDCNFFLWADQQAEQAAPAGSRGPTSQNSQPPRPSIGFGNVPQQRQNGRGS
GGDDGETMCNCNEPAVTRTVMKDGPNKGRMFHTCGKLRDQQCGFFQWANENVAPATVFSG
GNSARPSGNKKTSSTSNKPPTAKRPRTCGLCHEPGHTRVTCPQGR
NT seq
3018 nt
NT seq
+upstream
nt +downstream
nt
atgaacgttttgtttaggttactaagggtgacaattgacagtcgattttatagacaaata
tctgtaagcatgataaggcgcacacagattaagaaagtgctttgcgtagctgagaaaaac
gatgcagctaagggcatagcagagatcatgtcaaccgggaggtcgagaagaagagaaggc
tactctgtttacaacaaaatatatgagtacgactaccacctgtttggtcaaaatgtaact
gtaagcatgacatctgtatcaggacatctcttaggtcttgaattcaaagctccctttcag
aaatggcatagttgtaatccagtcctgttgtttgatgccgaagtggaaaagtactgccct
gaaaacttcatacccatcaaactatgtacttacattatccagaggactttggagagagag
gtaagacagtgtcaagctctggtcatctggactgattgtgacagagaaggagaaaatatc
ggctttgagatcattgatgtttgcaaagcagtgaagccaaacgttcaggtcttccgtgca
cggttctccgagatcaccccgaactccataaggagagcctgtgagacccttactgagcca
gatatcaacatcagtgatgcggtggacgtcagacaggagctggatctccgcatcggggca
tcatttaccaggttccagacattgcgcttgcagaagatattcccagaatcgctctctgat
cagctcatcagttacggcagttgtcagttcccgacccttggctttgtagtagagcggttt
aaagccattcaagccttcatccctgaaactttttttaaaatcaaagttgtccatgagcca
aatgaagaggaatccgttgaattcagctggaaaagacatcgtcttttcaatcacacagca
tgccttgtgctgtatcagatgtgcatggaggacccaatggcaaaagtgatatctgtaaca
agtaaaccaaaaaataaatggcgacctctgccccttgacactgtggaacttgaaaaactg
gcttcaagaaaactgaggataagtgccaaagaaaccatgaaaattgcagaaaagctttac
actcaagggttcatcagttatcctcgtactgagaccaacatgtttccacagaacctgaac
ctaaccacgctggttgagcaacagacacaagacaacgaatggggaaattttgctcagcgc
attttggacagcggtgggcccacacctcgaaatggaaacaaatcggatcaggcccatccc
cccattcaccccaccaaatacacccacagcttacagggaaatgaaaagcggctctatgag
ttcattgtacgtcacttcttggcctgttgctccaaagatgctcagggacaagaggttacg
gttgaaattgaaatagctgaggagagattctcagcgagtggactgacgatcattgctcgc
aattatctggaagtgtacccttacgacaagtggtacaataaggttattccattatatacg
gctgacaccacgttccagcccacagcgattgagatggtggaaggacagaccagcccacca
cagcttctgacggaggccgatttgatatcgcttatggagaaacatggcattggcaccgat
gctacacatgctgagcacattgagaccataaagagtcgcatgtacgtggggctgacggct
gaccagaggttccttcctggagaacttggcatgggtctcgttgaagggtataactcaatg
gggtatgagatgtctaaaccagatctgagagcggagctggaggctgaccttaaacttgtg
tcagagggccgaaaggacaaagcctctgtcctcagttatcatgtggccaaatacaaggct
gtttttatcgagtccgtgaggaaggcaaagaaattggatgaggctttgtcaaattatctg
ggccctgctcaggagatcactgaacaggagcaaggacagatggagataccattaccagtg
cgaaagtgtccacagtgtaaccgtgacatggtgctgaagaagaagaaagacagcacaagg
atgtttctttcatgtatgggatatccagcctgtaaagcagccgtgtggtttcctgacaca
gttttggaggtcagcagagacgagagcatctgtccaacttgccgtccacatccagtgcat
atgctgaagtttaaattcaagaggggaagtttgccacctatgatgccccttgaatttgtt
ggatgcataggaggatgtgacgagactctcagagaggtcttaaacttgaaatatatccga
ggaggagaagcagattcgggctctcgggcccacaacggatctggatcaaatcagaatcac
atacctagaaccaactctgtacctccacccagggttacgcctccagcaccccgtccccca
gccagtctgccacctccacgggcagcacaaccacctgcttcagcccagggcggtgccatt
gtatgtaactgtggacaggatgccattcttctcacggttcgcaaagagggacccaatcaa
ggccgtcagttttacaagtgtaacacgggagactgtaatttctttctgtgggctgatcag
caggctgagcaggcagctcctgcagggagtagaggacccacgagtcagaattcacaacct
cccaggccctcaattggatttgggaatgtacctcagcagaggcaaaacggcagaggatct
ggaggtgatgatggtgagaccatgtgtaactgtaatgagcctgcggtgaccaggaccgtc
atgaaagatgggccaaacaaggggagaatgttccacacctgcgggaaactgcgtgaccag
cagtgtgggttcttccagtgggcgaacgaaaatgtggctccagccactgttttctctgga
gggaatagtgccagaccttcagggaacaaaaagaccagcagtacctcaaacaaacctccc
actgccaaaaggccgagaacctgtggactgtgtcatgaaccgggtcacacacgggtcacc
tgtccacagggcagatga
DBGET
integrated database retrieval system
