Puntigrus tetrazona (Sumatra barb): 122339611
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Entry
122339611 CDS
T08985
Symbol
ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ptet01001
]
122339611 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ptet04054
]
122339611 (ciita)
Enzymes [BR:
ptet01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
122339611 (ciita)
Protein kinases [BR:
ptet01001
]
Serine/threonine kinases: Other
TAF1 family
122339611 (ciita)
Pattern recognition receptors [BR:
ptet04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
122339611 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
AAA_25
LRR_8
Pox_A32
TsaE
DO-GTPase2
ABC_tran
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
122339611
NCBI-ProteinID:
XP_043089894
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All DBs
Position
3:18426360..18437883
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AA seq
1050 aa
AA seq
DB search
MEYLRKKDAESQNIVSDPMAELLPDNVILKYLESLESIEEDFDPTILDNFSGDIDIICTP
KPENATFQNEVPVKKAKVVVAVNRKPHRKHNKKATKCPESPPSGKTPTITPESFHLSTTQ
FQHVLRIPFSPPLLPPSGGSPLQIIQTIGPYTPPLFGTVVPTGPAYVIVSPQCVSPGAQI
IPLSPAIGTVAPPELTGSVLPVGSSSDSACQGSPTVDPLSPTKDLQKIISTSPKTEKKIR
PEAPECVKDYIHQTKCYMRDVCCAMRGGMGMDSHYVDTHLVQRKLLIKSGKNANKCLEKE
LVVLSDSERKKAKLDRSQLFHYNDSKPKQSIALLGKAGAGKTTFVQRLCLDWASGSLSQF
QFVFLLNCKTLDLTQSNYSLKGLLLDLSMSPRCDDPESVFKHILSCPDEVLIVFDSFDHI
KDLEGLLQSPAKSHTNTKYTIRQLFSGLFQKEILPGCTLLIATRPKDVLNQVLRKMDSLL
ELSGFSPEDIELYTSKYFGDTSLQESALKQIKSDGYIFSLCSNPLLCRTTCFLLEHQESC
DDLPSTLTDLYQRATSRHLQLASLENGALCKNRKQPDIPQLCKMAWEGFKNHDTCVNPAS
STELLDCALKSGILASYKTSEGQENHFVDLFSQNLLSAVHLVQSKQVNEKMVVANSVVHH
KKRKVQGESQDVLQRFVTGLVFQKPPDGISILDSSVNIKAKRKAVETHLESMKPNDLVPA
RLLELFHCVYETSSAKFAKLLLKNLPENLSFYGTQLCPSDVYVICHLLQYASALKRTFSI
NLQDTCIPISGLKELVGLKCIKEFWAHTADTIGLWEDLDQSNDELNLKSAIEKFTLHPFK
ATEAYHIDSLPVLVQIHREKKLPMSEFVSALDEGVPALRHLQRLEYELGVQNGPELFPKL
VEVLPSLQSLQHLDLEKNQIGDSGAEKLASVLHFLKCLKLLNLSQNLIGDAGVEKLAKAF
ASVPSLQSLSLYGNAIADTGAEHLALVLPDMNFLQDLNVAFNKFTDLGATKLSAALKNCT
GMKSLELWNDCIPYGVFEHLRLQDPRIRSL
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atggaatatctgcgtaaaaaagatgctgaatcgcaaaatatcgtctcagacccaatggct
gaactcttacctgataatgtcatcttaaaatatctcgagtcacttgagtccattgaagag
gatttcgatcccaccatcctagataacttctcaggcgacatagacataatctgcacgcca
aaaccagaaaatgctactttccaaaatgaagtgccagtcaaaaaagcaaaggtagttgtt
gcggtcaacagaaaacctcacagaaagcacaacaaaaaagcaacaaagtgccctgaaagt
cccccaagcggaaagacgcccactatcacccctgagagcttccatttgagcacaacccaa
tttcagcatgtattacgtattcccttcagtccccctcttctgccccctagtggaggttct
ccactacaaatcatccagaccatcggcccttatacgccacctctatttggcactgtggtt
ccaaccggacctgcatacgtgatcgtctcgccccagtgtgtgagtccaggcgctcagata
attcctctttcacctgccattggcaccgtggccccaccagaactcactggttctgtactt
cctgttggctcatcctcagacagcgcatgccagggttcaccaacagtggacccactctcc
cctacaaaagacctacaaaaaatcatttccacatctccaaaaactgaaaagaaaatccgc
ccagaggcaccagaatgcgttaaggactacatacatcagacaaaatgctacatgagagat
gtctgctgcgcaatgcgtgggggaatgggaatggattcacactacgtagatacgcatctg
gtccagaggaaactccttatcaaatccggcaagaatgcaaacaagtgtctggagaaagag
ctggttgtccttagtgattcagagcgaaagaaagcaaagctggacagaagccaattgttt
cattacaatgactccaaaccgaaacaatcaatcgctcttcttggaaaagccggagcgggg
aaaaccacgttcgttcagcgtttatgcttggactgggcgagcggcagtctgtctcaattt
cagtttgtttttttgctaaactgtaaaactttagacctcacacaatcaaactacagcttg
aaaggcttactgttggacttgtctatgtctcctcgctgtgatgaccctgaatctgtgttc
aaacacattctttcctgccctgatgaagttctcattgtctttgacagctttgatcacatt
aaagacttggaggggcttcttcagtcccctgctaaatcgcacacaaacactaaatacaca
atcagacagctattttctggtttgttccaaaaggaaatcctcccgggctgcacgcttctc
attgccacgaggcctaaagacgttttaaatcaggtgctgcgaaaaatggacagccttttg
gagctttctggcttctctcctgaagacattgagttgtatacatctaaatatttcggagac
acttccctccaagaaagtgcactaaaacagattaagagtgatggatacatattcagttta
tgctccaacccgctgctttgtcggactacctgcttcctgctcgagcaccaagaaagctgt
gatgatttgccttcaaccctcacggatttgtaccaaagagcgacatcaaggcatctgcag
ctagctagccttgaaaacggcgctttgtgtaaaaacagaaaacagccggacatcccacag
ttatgcaaaatggcatgggagggattcaagaatcatgacacgtgtgtaaaccctgccagt
tctacagagctgctggactgcgcccttaaaagtggcatacttgcatcctacaaaacatct
gagggtcaggaaaaccactttgtggaccttttctctcagaacctcctgagcgctgtgcac
ctggtgcagtctaaacaggtgaacgaaaagatggtggtggcaaacagcgtagtccatcac
aagaaacgaaaggttcagggagagtcgcaggacgtgttgcagaggtttgtcacggggctg
gtcttccaaaagcctcctgatggaatcagcatcctggacagcagtgtcaacataaaagcc
aaaagaaaggccgttgaaacccatctggagagcatgaagcccaatgatttggtgcctgcc
aggttactagaactgtttcattgtgtttacgagaccagcagcgccaaatttgccaaactg
cttttgaagaacctgcctgaaaacctgtcgttctatgggacgcagctttgcccatcggac
gtgtatgttatctgtcatctccttcaatatgccagcgcgttgaagcggaccttctccatt
aacctgcaagacacgtgcattcccatcagtggcctgaaagagcttgtgggacttaaatgc
atcaaagaattctgggctcatacagcagacaccattggcttgtgggaggacttggatcaa
agcaacgatgaactgaacctgaaaagcgccattgagaaattcactttgcacccattcaag
gcaaccgaagcgtatcacatagacagcctgcctgtccttgtccaaattcacagagagaaa
aagctaccaatgagtgaatttgtgtctgcactggatgaaggtgtgccagccctccggcat
cttcagagactcgaatatgagcttggagtacagaacggtcctgaacttttccctaaactc
gtagaggtcctgccttctctgcagtccctccagcatctagaccttgagaaaaaccaaata
ggagactctggagccgagaagctggctagcgttttacattttttgaaatgtctgaaattg
ctaaatctgtctcaaaacctcattggagatgcaggagtggagaaactagctaaagctttt
gcatcagtcccttctctacagagcctcagcctttatggaaatgcaattgctgacactgga
gctgaacatctggccttagttttaccagacatgaatttcctgcaggacctgaacgtagct
ttcaacaagttcacagaccttggagctacaaagctcagtgctgctctgaaaaactgcaca
ggaatgaagtctctggagctgtggaacgactgcattccatatggagtttttgaacacctc
cgacttcaagatcctcggatacgatcactttga
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