Puntigrus tetrazona (Sumatra barb): 122341265
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Entry
122341265 CDS
T08985
Symbol
cpsf4
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4 isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122341265 (cpsf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptet03021
]
122341265 (cpsf4)
03019 Messenger RNA biogenesis [BR:
ptet03019
]
122341265 (cpsf4)
Transcription machinery [BR:
ptet03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122341265 (cpsf4)
Messenger RNA biogenesis [BR:
ptet03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
122341265 (cpsf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_2
zf-CCCH_3
zf-CCCH_12
zf-CCHC
zf-CCCH_4
zf-CCCH_RBM22
zf-CCCH_DUS3L
zf-CCHC_3
Nab2-like_zf-CCCH_
zf-C3H1
Motif
Other DBs
NCBI-GeneID:
122341265
NCBI-ProteinID:
XP_043090572
LinkDB
All DBs
Position
3:15595214..15598712
Genome browser
AA seq
273 aa
AA seq
DB search
MQELIACVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFMRAACMKGGMCPFRHI
SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK
IKDCPWYDRGFCKHGPDCRHRHTRRVICVNYLVGFCPEGKSCKFMHPRFELPMGATEQPP
LPQQAQSQQKFNLQQQNMQPTNRSSQSLIQLTNTNINNNQRMPNAVGIVHSNNNMGGPRG
PRPLDQVTCYKCGEKGHYANKCTKGHLAFLSGQ
NT seq
822 nt
NT seq
+upstream
nt +downstream
nt
atgcaggaattaatcgcgtgtgtcgatcatatcaagtttgatttagaaattgctgtagaa
caacaattaggcgctcaaccattgccatttccaggaatggataaatctggcgcagctgta
tgcgagttcttcatgagagctgcctgtatgaaaggtggaatgtgtcctttcagacacatc
agcggagaaaagactgtggtgtgcaagcactggcttagaggtttatgcaagaagggagac
cagtgtgaatttttacacgagtatgacatgacaaagatgcctgaatgttatttctactct
aaatttggggagtgcagtaataaagagtgtccatttttgcacattgacccagaatctaag
attaaagattgcccatggtatgatagagggttttgtaagcatggtccggactgcaggcac
agacacacaagaagagtcatctgtgtaaattacctggttggcttctgcccagagggcaag
tcatgcaaatttatgcacccaagatttgaactccctatgggtgctactgaacagccacca
ttaccacagcaggcccagtctcagcaaaagtttaatctccagcagcaaaacatgcagcct
acaaacaggtcctcacagtcactcatccagttaaccaacaccaacatcaacaacaaccag
agaatgccaaatgctgttgggatagtgcactctaacaacaacatgggtggcccccgcggt
cctcgtccactggatcaagttacgtgttacaagtgtggtgagaagggccactacgcaaac
aaatgcaccaaaggacacctggcgtttttgagcggacagtaa
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