Puntigrus tetrazona (Sumatra barb): 122341646
Help
Entry
122341646 CDS
T08985
Symbol
ddx5
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122341646 (ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ptet03041
]
122341646 (ddx5)
03009 Ribosome biogenesis [BR:
ptet03009
]
122341646 (ddx5)
Enzymes [BR:
ptet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122341646 (ddx5)
Spliceosome [BR:
ptet03041
]
Complex A
U1 snRNP components
U1 related factors
122341646 (ddx5)
Complex B
122341646 (ddx5)
Ribosome biogenesis [BR:
ptet03009
]
Eukaryotic type
Pre-60S particles
Helicases
122341646 (ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
BNIP2
Motif
Other DBs
NCBI-GeneID:
122341646
NCBI-ProteinID:
XP_043091084
LinkDB
All DBs
Position
3:complement(23747717..23752619)
Genome browser
AA seq
641 aa
AA seq
DB search
MPGYSDRDRGRDRGYSSGPPRFGGSRGGPPPGKKFGNPGDRLRXKHWNLDELPKFEKNFY
QEHPEVARRSTQDVEHYRRSKEITVKGRDCPKPIVKFHEANFPNYVMDVIGKQNWTDPTP
IQAQGWPVALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTREL
AQQVQQVAAEYGKASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNL
RRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYVQ
INVGALQLSANHNILQIVDVCNDGEKEDKLMRLLEEIMSEKENKTIIFVETKKRCDDLTR
RMRRDGWPAMGIHGDKSQQERETGCSMVCSRPSLASWMPFWVICTIXLSLSSFNRIQIGK
APILIATDVASRGLDVEDVKFVINYDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMK
QAHDLVSVLREANQAINPKLIQMAEDRGGRSRGGRGGGYRDDRRDRHSGGRRDFNSYGQD
NRNGDSYGQKKVFGNKTQNGSSGYNSSSSSSSFSGGYSNNGQGNLGNQSGGYGNQGYQNQ
QFAPNQGAVQNGMNHPPPFPFNPQQMPQSMPFPMAPPAFPQ
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatattcagatagagaccgcggtcgcgacagaggttacagcagtggaccacca
cgctttggaggcagtagaggtggacctcctcctggcaagaagtttgggaatcctggtgac
cgtctgcggnaaaaacactggaacctggatgagctccccaagtttgagaagaacttctac
caggagcatccagaagttgctcggaggtcaactcaagatgttgaacactacaggagaagt
aaagagatcacggtgaagggtcgagactgtcccaaacccattgtgaagttccatgaagca
aactttccaaattatgtgatggacgtgatcggtaaacagaactggactgatccgactccc
atccaagctcaggggtggcccgtcgcactgagtggcaaagatatggttggcattgcacag
actggctctggaaaaactctctcgtatctgcttcctgctattgttcacataaaccaccaa
ccattcctggagcgtggcgacggtcccatttgcttggtgctggctcccacccgtgaattg
gcacagcaggtccagcaggtggcagcagagtatggcaaagcttctcgtctcaagtccacc
tgcatctacggaggtgctcccaaaggaccacagatccgggacctggaaaggggtgttgag
atttgtattgccacacctggaagactaatcgatttccttgaagctggaaagacaaatctg
cgcaggtgcacgtatctggtgctcgacgaagctgacaggatgcttgacatgggatttgaa
cctcaaattcgaaaaattgtggaccaaattagaccagaccgacagactctcatgtggagc
gcaacgtggcccaaagaggtgaggcagctggctgaggacttcctgaaggactatgtacag
atcaacgtcggtgctctgcagctcagcgccaaccacaacatcttacagatagttgacgtt
tgcaacgacggcgaaaaggaagacaaactaatgcgcctgctggaggaaatcatgagtgag
aaggagaacaagaccattatttttgtggagaccaagaaaaggtgtgacgatctcaccagg
aggatgcgcagggatgggtggccagcgatgggcatccatggagataagagccagcaagaa
agagagactgggtgctcaatggtatgttctcgcccaagtcttgcgtcatggatgccattt
tgggtaatttgcacaatttgactctctctatcctccttcaacagaattcaaatcggcaaa
gcgcccatcctcattgccacagatgttgcctccagaggactagatgtggaagacgtcaaa
tttgtcattaactatgactaccccaacaattccgaggactacattcaccgcattggccgt
acggctcgcagtcagaaaaccggcacagcctacactttctttacgcccaacaacatgaaa
caggctcacgacctcgtctcggtcctccgtgaggccaaccaagccataaaccccaagctc
atccaaatggccgaagacagaggaggtcgttcaaggggaggtcgaggtggagggtatagg
gacgaccgtcgggaccgccactctggcggcagacgggacttcaacagctacggccaggat
aaccgtaacggtgactcatatgggcagaagaaagtgtttggaaacaaaactcaaaatgga
tctagcggttacaatagcagcagcagcagtagcagctttagcgggggttacagcaataac
ggacagggtaacctcggcaatcagtctggtgggtacggaaaccaaggctatcagaaccag
cagtttgctcccaaccaaggggctgtccagaacggcatgaaccaccctccaccgttcccc
ttcaacccccaacagatgccacagtccatgccgttccccatggctccacctgcgttccct
cagtaa
DBGET
integrated database retrieval system
