Puntigrus tetrazona (Sumatra barb): 122341734
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Entry
122341734 CDS
T08985
Symbol
thoc6
Name
(RefSeq) THO complex subunit 6 homolog
KO
K13175
THO complex subunit 6
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03013
Nucleocytoplasmic transport
ptet03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122341734 (thoc6)
09122 Translation
03013 Nucleocytoplasmic transport
122341734 (thoc6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptet03019
]
122341734 (thoc6)
03041 Spliceosome [BR:
ptet03041
]
122341734 (thoc6)
Messenger RNA biogenesis [BR:
ptet03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
122341734 (thoc6)
Spliceosome [BR:
ptet03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
122341734 (thoc6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_WDHD1_1st
Beta-prop_IFT122_1st
WD40
Beta-prop_WDR3_1st
Beta-prop_WDR5
Beta-prop_THOC3
WD40_Prp19
Beta-prop_EML
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
Beta-prop_NOL10_N
WDR55
Beta-prop_EML_2
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
ANAPC4_WD40
CFAP251_N
WD40_Gbeta
TRM82_WD
WD40_MABP1-WDR62_2nd
WDR54
NBCH_WD40
DSE1_N
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_WDR36-Utp21_1st
Beta-prop_IP5PC_F
Beta-prop_IFT140_1st
Beta-prop_ACSF4
Beta-prop_SCAP
Beta-prop_HPS5
ASA1
Beta-prop_LRRK2
WD40_like
Beta-prop_VPS8
Beta-prop_WDR41
Motif
Other DBs
NCBI-GeneID:
122341734
NCBI-ProteinID:
XP_043091249
LinkDB
All DBs
Position
3:12159182..12162641
Genome browser
AA seq
323 aa
AA seq
DB search
MGPVELLHMSVFSQSFSPCGRFLAAGNNYGEIAVFSLSAALSPDASEGSQKPILNFTAHD
GPVFTLLSTDTHLLSAGNGEISAWSWAELIKKSTKAAWTRKPSYETSLEIPEINAMIINP
RDNSLVVGGGDNNIHIMDMETGIFKSALKGHTDYIHCLCFKEREGEILSGGEDGAVRIWD
SRTNRPVHCIEVFKYEECARPQYGKWISCLATDSDWMLCGGGPSLSLWHLRSMSPTSVFP
LPGCQREAVFHQDLIMSVGEGPYVSHCLHGGTVKAQIPCTPSSLNTMALNLKNTEHRVMT
VGGSSHQIDVFTNFSYRAFSLSF
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atgggtccagttgagctgctgcatatgtccgtgttctctcagagtttctctccatgtggt
cgtttccttgcagcgggtaacaactatggagagatcgcggtgttcagtctttcagctgca
ctgagtccagatgcttcagagggcagccagaagcccatccttaacttcactgctcacgat
ggtccggtgttcactcttctctccacggacactcatctcctgagtgctgggaacggagag
atcagtgcctggagctgggcagagctaatcaaaaaaagcaccaaagctgcatggacaaga
aaacccagttatgagactagtcttgaaataccagagatcaatgcaatgatcattaaccca
agggacaacagcttggtagttggaggaggtgacaataacattcacatcatggacatggag
actggcatctttaagtctgcactaaaaggccacaccgactacatccactgcctgtgcttt
aaagaaagggaaggggagatcctctctggtggggaagatggtgctgtgaggatatgggac
tcccgaacaaatcgcccagttcactgtattgaagttttcaaatatgaggaatgcgcacgc
ccccagtatgggaagtggataagctgtcttgctacggactctgattggatgctctgtggt
ggaggcccatcgctctcattatggcacctccgttccatgtcccccacctctgtgttccct
ttgcccggctgtcaaagggaagctgtctttcaccaggacctgatcatgtcagtaggcgag
gggccgtatgtgtcccactgtttacatggagggacagtgaaagctcagattccctgcact
ccttcctcactcaacacaatggctctcaatctcaaaaacactgaacacagggttatgaca
gtagggggcagcagtcatcaaattgatgtgtttaccaacttcagttacagagccttttct
ctgtcattttga
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integrated database retrieval system
