Puntigrus tetrazona (Sumatra barb): 122342014
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Entry
122342014 CDS
T08985
Name
(RefSeq) transcription activator BRG1 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122342014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptet03021
]
122342014
03036 Chromosome and associated proteins [BR:
ptet03036
]
122342014
Transcription machinery [BR:
ptet03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122342014
Chromosome and associated proteins [BR:
ptet03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
122342014
Chromatin remodeling factors
BAF complex
122342014
PBAF complex
122342014
GBAF(ncBAF) complex
122342014
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
HSA
Bromodomain
BRK
QLQ
ResIII
HDA2-3
DEAD
DUF2009
Motif
Other DBs
NCBI-GeneID:
122342014
NCBI-ProteinID:
XP_043091743
LinkDB
All DBs
Position
3:24994255..25009566
Genome browser
AA seq
1619 aa
AA seq
DB search
MSTPDPPMGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHGMMGPSPGPPSSGHPLPPQG
PSGYPQDNMHQMHKPMEGMHEKGIPEDQRYGQMKGMGMRQGGHSGMGPPPSPMDQHSQGY
PSPLGGSEHAPSPVPANGPPSGPMMPSGPGAMEGGDPQAMGQQNRSGGAGGVAGAGPSGG
PPNPGGPGGAGGPTPFNQNQLHQLRAQIMAYKMLARGQALPDHLQMAVQGKRPMPGMQPG
MPNIPPASGQGAGGPGPAGPNYNRPQGMVGPNMPPPGPSGVPPGLQGQPTNGPPKSWPEG
PMVNAAAPASAPQKLIPPQPTGRPSPAPPSVPPAASPVMPPQTQSPGQPAQPPMVLHQKQ
NRITPIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKANIELKALRL
LNFQRQLRQEVVVCMRRDTALETALNGKAYKRSKRQSLREARITEKLEKQQKIEQERKRR
QKHQEYLNSILQHAKDFKEYHRSITAKIQKLTKAVATYHANTEREQKKENERIEKERMRR
LMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRAHKAVQALKDKKKKKKKKKP
ENAEGGAPALGPDGEPLDETSQMSDLPVKVIHVDSGKILTGMDAPKAGQLEAWLEMNPGY
EVAPRSDSEDSGSEEEEEEEEEPQPSQAPTEEKKIITDPDSEDVSEVDARHIIEHAKQDV
DDEYGNAAFVRGLQSYYAVAHQVTEKVDRQSSLLINGQLKQYQIKGLEWLVSLYNNNLNG
ILADEMGLGKTIQTIALITYLMEYKRLNGPFLIIVPLSTLSNWVYEFDKWAPSVVKVSYK
GSPAARRAFVPILRSGKFNVLVTTYEYIIKDKQVLAKLRWKYMIVDEGHRMKNHHCKLTQ
VLNTHYLAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVD
LNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKG
VLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGPDL
YRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRNFKYLRLDGTTKAEDR
GMLLKNFNDPSFQYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQ
QNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEE
QDEEEDEVPDDETVNQMIARSEEEFDHFMRMDLDRRREEARNPKRKPRLMEEDELPTWIM
KDDAEVERLTCEEEEEKMFGRGSRQRKEVDYSDSLTEKQWLKAIEEGTLDEIEEEVRYKK
TTRKRKRDRDLDLPGPATPSSSGRSRDKDDDSKKQKKRGRPPAEKLSPNPPTLTKKMKKI
VDAVIKYKDGNGRQLSEVFIQLPSRKELPEYYELIRKPVDFRKIKERIRSHKYRTLNDLE
KDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEEESEGEESEEEEDEVDEGS
ESESRSVKVKIKLSRKEKVERGKGRRRTGRSWRPKPVVSDDESEEDQEEERSASGSEED
NT seq
4860 nt
NT seq
+upstream
nt +downstream
nt
atgtccacccctgacccacccatgggcgggacccctcggccgggcccttccccaggccct
gggccgtctccaggggccatgttagggcctagtcctggaccctcgcctggctctgctcat
ggcatgatgggccccagccctgggcccccctcctcaggacacccactacctccacagggc
ccctcaggttacccccaggacaacatgcaccagatgcacaagcccatggaaggcatgcat
gaaaaaggcattcctgaagatcagcgctacggtcaaatgaagggtatgggcatgaggcag
ggtggccacagcggcatgggacctccgcccagtcctatggaccaacactctcaaggttac
ccctctcctctaggtggttctgaacatgcccccagtccggtacctgctaacggccctccg
tctggccccatgatgccctccggtcctggtgccatggagggtggtgatccgcaggccatg
ggtcagcagaatcggagcggaggtgccggtggtgttgcaggtgcaggacccagcggagga
cctccaaacccaggaggacctggtggtgctggtgggcctactccttttaaccaaaaccag
cttcaccaactgcgggcacagatcatggcctataagatgctagcacgcgggcaagctcta
cctgaccatctccagatggcggtgcagggaaaacggcccatgccaggcatgcagccaggg
atgcccaacataccccctgcctcaggacaaggagcaggaggccccggacccgcgggaccc
aactacaatagaccacaaggaatggtcggaccaaacatgcctcctccaggaccttctggt
gttcctccaggccttcagggacaacccaccaatggaccacctaaatcctggcctgaaggg
cctatggtgaatgctgccgcccctgcgagtgccccacagaagctgatacctcctcagccc
acaggtcgcccgtctccagcaccaccttcagttcctccggccgcttcacccgtcatgccc
cctcagacccagtctccaggacaaccagcccagccacccatggtgcttcatcagaaacag
aaccgcatcacacccatccagaaaccccggggcctggacccagtggagatcctccaggag
agagagtacaggttacaggctcgtattgctcatcgtattcaggagctggagaaccttcca
ggatctctggctggagacttgaggaccaaagccaacattgagctcaaggcacttaggctc
ctgaacttccagagacagctccgtcaggaggttgtagtttgcatgagacgtgatacggcc
ctggagactgcgctgaacggcaaggcctacaagcgcagcaagagacagtccctgcgagaa
gctcgtatcacagagaaactggagaaacagcagaagatcgagcaggaacgcaaacgccgt
cagaaacatcaggagtatctcaacagcatcctgcagcatgcaaaagacttcaaggaatat
catcgctccatcaccgcaaagattcagaagttgaccaaagccgtagccacataccacgcc
aacaccgagagagagcagaagaaggagaatgagcgtatcgagaaggagagaatgagaagg
ctgatggctgaagatgaagagggatacaggaagctgatcgatcagaagaaagacaagcgt
ctggcttacttgctgcagcagacggacgagtatgtggccaacctcacagagcttgtcaga
gctcacaaagcagtccaggccctgaaagacaagaagaagaagaagaaaaagaagaagcca
gagaatgctgagggtggagctcctgctttgggtccagatggagagcctctggatgagacc
agtcaaatgagtgacctaccggtgaaggtgattcacgtggacagtgggaagatcctcacc
ggcatggacgctcctaaagctggacaactggaagcctggctggagatgaatcctggatac
gaggtggccccgcggtctgatagtgaagatagcggctctgaggaggaggaggaggaggag
gaggagcctcagccatctcaggccccaacagaggagaagaagattattacggatccagac
agtgaggatgtttctgaggtggacgcccgtcacatcattgaacatgccaagcaggatgtt
gacgatgaatacggtaatgcagcgttcgttagaggtctgcagtcgtactacgccgtggct
caccaagtcacagagaaggtggacaggcagtcaagcttgttaataaacggacagctcaaa
cagtaccagatcaaaggtctggagtggctggtgtctctgtataataataacttaaatggc
attctggctgatgaaatgggtttgggaaaaaccatccagaccattgcactcatcacctac
ctcatggagtacaaacgcctcaacggacccttcctaatcatcgtccccctttcgactctg
tcgaactgggtgtacgagtttgataagtgggctccgtctgtggtgaaagtttcttataag
ggctctcctgctgctcgtcgtgcttttgttccaatattgcgcagcggcaagttcaacgtg
ctggtcaccacttatgagtacatcatcaaagacaagcaagtgctggccaagctccgttgg
aagtacatgatagtggacgaaggccaccgtatgaagaatcaccactgcaaactgactcag
gtgttgaacacgcactacctggcgccccggcgtctgctgctcaccggcacaccgctgcaa
aacaagctccccgaactgtgggcgctgctcaacttcctgttgcccaccatcttcaagagt
tgcagcaccttcgagcagtggttcaacgctccgtttgccatgaccggagagaaggtggac
ctgaacgaagaagagaccattctgatcatccgtcgtctgcacaaagtgctccgccccttc
ctgctcaggagactcaagaaagaagtggaggcccaactgcccgaaaaggtggagtacgtg
atcaagtgcgacatgtcggctcttcagagagtgctttacagacacatgcaggctaaagga
gttttgctcaccgatggctctgagaaagacaagaagggtaaaggcggcactaagactctg
atgaacactattatgcagctgaggaagatttgcaaccacccttacatgttccagcacatt
gaggaatctttctctgagcatttgggtttcactggaggcatcgttcagggacctgatttg
taccgtgcctccggtaagtttgagctgctggaccgtatcctgccgaagctccgcgccacc
aaccacaaagtgctgctcttctgtcagatgacctcgctcatgaccatcatggaggattac
tttgcctaccgcaacttcaaatacctgcgcttggacggaaccaccaaggctgaggatcgt
ggcatgttgctgaagaactttaatgatccatcctttcagtactttatcttcttgctgagt
accagagcaggaggtctggggctgaacctgcagtccgctgacactgttatcatctttgac
agcgactggaaccctcaccaggatctgcaggcccaggatcgcgcccatcgtatcgggcag
cagaacgaggtgcgtgtgctgcgtctgtgcaccgtgaacagcgtggaggagaagatcctg
gccgctgccaaatacaaactgaacgtggaccagaaggtcatccaggccggtatgttcgac
cagaagtcgtccagccacgagcgcagagctttcctgcaggccatcctggagcacgaagag
caggatgaggaggaagatgaagtgccagacgacgagactgttaatcagatgatcgctaga
agcgaggaagagttcgatcacttcatgcgcatggatctcgaccgccgtcgggaagaggct
cgcaacccgaaacgcaaaccccggctgatggaggaggatgagctgcccacctggatcatg
aaggacgacgcagaagtggagaggctcacctgcgaagaagaggaggagaagatgttcggc
cgcggctcccgtcaaagaaaagaagtggactacagcgactccctcacagagaaacaatgg
ctgaaggccattgaggaaggcactctggatgagattgaagaagaggtgcgctacaagaaa
acaacccggaagaggaagcgcgaccgcgaccttgaccttccaggcccagccacacccagc
tccagcgggaggagcagagataaagatgacgatagtaagaagcaaaagaaacgaggccgt
cctcctgccgaaaaactctcgcctaaccctcccacgctcaccaagaagatgaagaagatt
gtggatgccgtgatcaaatacaaggatggaaatggtagacaactgagtgaggtgtttatt
caactgccgtcacgtaaagagctgccagaatattacgaactcattcgcaaacctgtggac
tttaggaagatcaaggaacgcattaggagtcataagtaccgtactctgaatgacctggag
aaagatgtcatgcttctctgtcagaacgcgcagacctttaacctggagggatcactgatc
tacgaagactctatcgtgctgcagtctgtgttcaccagcgtgcggcagaagatcgagaaa
gaggaagagagcgagggagaagagagcgaggaggaagaggacgaggtagatgaaggatca
gagtctgaatctcgttcagtgaaggtgaagataaagctgagcagaaaggagaaggtggag
agagggaagggaagacgccgtaccggacgcagttggcgccctaaacctgtcgttagcgat
gacgaaagcgaggaggaccaggaagaggagcgttctgctagtggcagcgaggaagattaa
DBGET
integrated database retrieval system
