Puntigrus tetrazona (Sumatra barb): 122342076
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Entry
122342076 CDS
T08985
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122342076 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptet03019
]
122342076 (xab2)
03041 Spliceosome [BR:
ptet03041
]
122342076 (xab2)
Messenger RNA biogenesis [BR:
ptet03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
122342076 (xab2)
Spliceosome [BR:
ptet03041
]
Complex B
Other components
Prp19-related factors
122342076 (xab2)
Complex C
122342076 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
Suf
TPR_12
TPR_19
TPR_8
TPR_15
TPR_16
ARM_TT21_C
NRDE-2
ARM_TT21
SNAP
ATG1-like_MIT2
LTN1_E3_ligase_6th
Motif
Other DBs
NCBI-GeneID:
122342076
NCBI-ProteinID:
XP_043091783
LinkDB
All DBs
Position
3:9206654..9212934
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AA seq
848 aa
AA seq
DB search
MPTLSGKADVLFEDDDLPYEEEIIRNPYSVKCWMRYIEHKQNAPKTMLDMIYERALKELP
GSYKLWYNYLRERRKQVKGKCVTDPAYEEVNNCHERALVFMHKMPRIWIDYCQFMVSQCK
ITRSRRTFDRALRALPITQHPRIWPLYLRFARNLPLPETAIRVYRRYLKLSPENAEEYID
YLRSVGRLDEAAIRLAAVVNDENFVSKEGKSNYQLWHELCDLISQNPDKVTSLKVGAIIR
GGLTRFTDQLGKLWCSLSDYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSELGQDEEDDIDLELRLARFELLITRRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGQPRQIINTYTEAVQTIDAMKATGKPHSLWVSFARFYEDNEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYDQALRILRKATAIPARKAEYFDSSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEDSFKAYERGI
ALFKWPNVHDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKYAKTIYLLYAKLEEE
YGLARHAMAVYERATAAVEPEERHQMFNIYIKRAAEIYGVTHTRAIYQKAIEVLPDEHAR
DMCLRFSDMESKLGEIDRARAIYSYCSQICDPRVTAHFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTNATGTVSDLAPGQSGVDDMKLLEQKAQQLAAEAEQ
DKPKPKDKILFVRSDTSRSELAELAKQANPDEIDIDDEDEDAEDGEPDEVQLEQKSVPTA
VFGGLKDD
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgccgacgcttagcggaaaggcagacgttttattcgaagatgatgatttgccttacgaa
gaggaaatcatcaggaatccgtattcagtcaagtgctggatgcgttacatcgagcacaag
caaaatgctccgaaaacgatgcttgatatgatctatgaaagagctttaaaagagctgccc
ggcagttacaagctgtggtataactacctgcgagagagaaggaaacaggtgaaaggcaaa
tgtgtcacagatccggcatatgaggaggtgaacaactgccatgagagagcacttgtgttt
atgcataagatgccgaggatatggatcgactactgccagttcatggtgtctcagtgcaaa
attacacggagcagacggactttcgatagagcgttaagagcgctacccattacccagcat
cctcgcatctggcctctgtatcttcgctttgcccgtaacttgcctctcccagaaacagct
attcgtgtttaccgccgctacttaaagttgtcacctgagaatgcagaggaatacattgat
tacctgcgttcagtcggacgtcttgatgaagctgcgatccgattggcggctgtggtcaac
gatgaaaactttgtttctaaagagggaaagtccaattatcagctctggcacgagctctgt
gacctcatctcacaaaacccggacaaggtgacttcactgaaagtgggagcgattatccga
ggaggtctcactcgctttactgaccagcttggcaagctctggtgttctctgtctgattac
tacatccgcagcggacactttgagaaggctcgagatgtatacgaggaagccatcttaacc
gttgtcactgtacgagacttcacccaggttttcgacagctatgcacagtttgaggagagc
atgattgctgccaagatggagaccacatctgaactgggacaagatgaagaggatgacatt
gacttggagttgcgattggcgcgttttgagttgctgataactagacgaccgcttttgtta
aacagcgtgctgctgcgtcagaatcctcacaatgttcacgagtggcacaagagagtcaag
ctctacgagggacagccgcggcagatcatcaacacgtacacagaagctgtgcaaaccata
gatgccatgaaagccacaggaaaacctcacagtctctgggtgtccttcgccagattttat
gaggataatgaacagctggatgatgctcggactatcttcgagaaggccacaaaggtgaac
tacaaacaggtggacgatctcgctgcagtgtggtgtgaatatggagagatggagctgaga
catgagaattacgaccaagctttgcgtatactaaggaaagcaacagcgattccagccaga
aaagcagagtattttgattcatcagaaccagtgcagaatcgagtgtacaagtccctgaaa
gtgtggtccatgcttgcagacttagaagagagtcttgggacgttccagtccacaaaggca
gtgtacgatcgcatcattgatctccggatcgccactcctcagatcatcattaactacgcc
atgtttcttgaagaacacaactactttgaggatagtttcaaggcatacgagcgtggcatt
gccctctttaagtggcctaatgttcatgacatctggaacacgtaccttaccaagttcatt
gaccgttatggaggcaaaaaactggagagagcacgagatctattcgagcaagcgctggat
ggatgccctgctaaatatgcaaaaactatctacttgctgtatgctaagctggaggaggag
tacggtctggcacgacatgccatggctgtgtatgagagagccactgcagctgtagaacca
gaggaaagacaccaaatgttcaacatctacatcaaacgggccgcagagatttacggagtc
actcacacaagagccatctatcagaaagccatcgaggtcctgccggatgaacacgccaga
gacatgtgtctgcgcttctctgacatggagagcaaactcggagagatcgacagagcgagg
gccatctactcgtactgctctcagatctgtgatccgagggtgaccgctcatttctggcaa
acgtggaaggagtttgagatacgccacggtaatgaggacaccatccgtgagatgctgcgg
attaaacgaagtgtccaggccacatacaacacgcaagtcaacttcatgtcctctcagatg
ctcaaggcaaccaccaatgctactggaacagtgtcagatcttgctcctgggcagagcgga
gtggatgacatgaagctgctggagcagaaggctcaacagctggctgcagaggcagaacag
gacaaacccaagcctaaagacaagatccttttcgtcaggagtgacacctctcgcagtgaa
cttgccgaactggccaaacaagctaacccagatgagattgacattgatgatgaagatgag
gatgcagaggatggggaaccagatgaggtacaattggagcagaagtctgtccctactgct
gtcttcggaggactaaaggatgactga
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