Puntigrus tetrazona (Sumatra barb): 122342154
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Entry
122342154 CDS
T08985
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122342154
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ptet03041
]
122342154
03009 Ribosome biogenesis [BR:
ptet03009
]
122342154
Enzymes [BR:
ptet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122342154
Spliceosome [BR:
ptet03041
]
Complex A
U1 snRNP components
U1 related factors
122342154
Complex B
122342154
Ribosome biogenesis [BR:
ptet03009
]
Eukaryotic type
Pre-60S particles
Helicases
122342154
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
BNIP2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
122342154
NCBI-ProteinID:
XP_043091893
LinkDB
All DBs
Position
3:complement(22938970..22944245)
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AA seq
612 aa
AA seq
DB search
MPGYSDRDRGRDRGYSSGPPRFGGSRGGPPPGKKFGNPGDRLRKKHWNLDELPKFEKNFY
QEHPEVARRSTQDVEHYRRSKEITVKGRDCPKPIVKFHEANFPNYVMDVIGKQNWTDPTP
IQAQGWPVALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTREL
AQQVQQVAAEYGKASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNL
RRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYVQ
INVGALQLSANHNILQIVDVCNDGEKEDKLMRLLEEIMSEKENKTIIFVETKKRCDDLTR
RMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVINYDYP
NNSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQAHDLVSVLREANQAINPKLIQMAEDRG
GRSREVEVEVXGRRRDRHSGGRRDFNSYGQDNRNGDSYGQKKVFGNKTQNGSSGYNSSSS
SSSFSGGYSNNGQGNSGNQSGGYGNQGYQNQQFAPNQGAVQNGMNHPPPFPFNPQQMPQS
MPFPMAPPAFPQ
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatattcagatagagaccgcggtcgcgacagaggttacagcagtggaccacca
cgctttggaggcagtagaggtggacctcctcctggcaagaagtttgggaatcctggtgac
cgtctgcggaaaaaacactggaacctggatgagctccccaagtttgagaagaacttctac
caggagcatccagaagttgctcggaggtcaactcaagatgttgaacactacaggagaagt
aaagagatcacggtgaagggtcgagactgtcccaaacccattgtgaagttccatgaagca
aactttccaaattatgtgatggacgtgatcggtaaacagaactggactgatccgactccc
atccaagctcaggggtggcccgtcgcactgagtggcaaagatatggttggcattgcacag
actggctctggaaaaactctctcgtatctgcttcctgctattgttcacataaaccaccaa
ccattcctggagcgtggcgacggtcccatttgcttggtgctggctcccacccgtgaattg
gcacagcaggtccagcaggtggcagcagagtatggcaaagcttctcgtctcaagtccacc
tgcatctacggaggtgctcccaaaggaccacagatccgggacctggaaaggggtgttgag
atttgtattgccacacctggaagactaatcgatttccttgaagctggaaagacaaatctg
cgcaggtgcacgtatctggtgctcgacgaagctgacaggatgcttgacatgggatttgaa
cctcaaattcgaaaaattgtggaccaaattagaccagaccgacagactctcatgtggagc
gcaacgtggcccaaagaggtgaggcagctggctgaggacttcctgaaggactatgtacag
atcaacgtcggtgctctgcagctcagcgccaaccacaacatcttacagatagttgacgtt
tgcaacgacggcgaaaaggaagacaaactaatgcgcctgctggaggaaatcatgagtgag
aaggagaacaagaccattatttttgtggagaccaagaaaaggtgtgacgatctcaccagg
aggatgcgcagggatgggtggccagcgatgggcatccatggagataagagccagcaagaa
agagactgggtgctcaatgaattcaaatacggcaaagcgcccatcctcattgccacagat
gttgcctccagaggactagatgtggaagacgtcaaatttgtcattaactatgactacccc
aacaattccgaggactacattcaccgcattggccgtacggctcgcagtcagaaaaccggc
acagcctacactttctttacgcccaacaacatgaaacaggctcacgacctggtctcggtc
ctccgtgaggccaaccaagccataaaccccaagctcatccaaatggccgaagacagagga
ggtcgttcaagggaggtcgaggtggaggtatagggacgacgtcgggaccgccactctggc
ggcagacgggacttcaacagctacggccaggataaccgtaacggtgactcatatgggcag
aagaaagtgtttggaaacaaaactcaaaacggatctagcggttacaatagcagcagcagc
agtagcagctttagcgggggttacagcaataacggacagggtaactccggcaatcagtct
ggtgggtacggaaaccaaggctatcagaaccagcagtttgctcccaaccaaggggctgtc
cagaacggcatgaaccaccctccaccgttccccttcaacccccaacagatgccacagtcc
atgccgttccccatggctccacctgcgttccctcagtaa
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