Puntigrus tetrazona (Sumatra barb): 122343021
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Entry
122343021 CDS
T08985
Symbol
limch1a
Name
(RefSeq) LIM and calponin homology domains-containing protein 1a isoform X1
KO
K24422
LIM and calponin homology domains-containing protein 1
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ptet04990
]
122343021 (limch1a)
Domain-containing proteins not elsewhere classified [BR:
ptet04990
]
LIM domain-containing proteins
Other lim domain-containing proteins
122343021 (limch1a)
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Gene cluster
GFIT
Motif
Pfam:
DUF4757
CH
LIM
Motif
Other DBs
NCBI-GeneID:
122343021
NCBI-ProteinID:
XP_043093232
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All DBs
Position
1:11446738..11489578
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AA seq
1869 aa
AA seq
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MASPGDDSASNAPLDQAESADAAPEPAFQEAQKWIEAVTGRSFCDKDFRSGLENGILLCE
LLSSIKPGLVKKINRLPTPIAGLDNLTMFLRGCEELGLKGSQLFDPGDLQDTSIRANLTG
SDCCRKLKNVLITIYWLGKAANSCTTYNGPTLDLKEFEGLLSMMRKECVNEDLDSPKRSI
RDSGYIDSWESERSDSLSPPRHGRDDSFDSLDSFGSRSQNTPSPDTVIRCNSDDSEGDAG
HRKLPDVRKDDMSARRVSYKEPRAALPFNQYLPNKSNQTNYLPAPLRKRRSDREEDRRSL
SNSTSPVGGERPLRQECLEVLKEEAVVSRSLAIQKNSTWVNEERAEFEEAELKKIRKLEK
AGIKVLPASVRYSSPIVNPVEGSKAKAPSPDIILRRDNEFMRAAAPQQWDSNDEDDDEEA
ERKVPDVRKDDLASRRARMNQFKPSVAHHFLPGSCSWKDREKWEGIRLASQHAVLERMEK
MEQEKRSQADSASPEVPIIIRKDNPFLNPEKDRGKEGNEEDEKELEGKIVVPNPLKDDLA
RRRAGRGPHPPKDPHQSLAQTSITQSDLETWQRLKMNTDSSESESTPAEVSIITRKDNPF
LTPEKDSESEREKEEGTDREKGARVAMPNVKTDDLARRRGQSGPVPQRDPRQSLAQTTIT
QSDLEKWQRLKMNTESSDDPIVPLCQTCLEKGCLSVSSKMKVAKNDLASCRERSSGERRR
FVTFGGVTEMESTSWKEEEDEEGGEGQGDEAEKLRYLLSMAPVAVPTIGLGSILTKRAVG
SGDANPEPPPIMPPEPPNPVMFDLKRPLTSTERRALEEELAQKAKDEREDYEEDEEEEEE
KERQPDIEKDDMLARRTGAFPKPGSGTSFNRFLPQPASKREGATAASLAQKGTSGDRDLQ
YFERSIKTKRSKIGQRNEPVVPVAVVTEKSSDIAHSSTTNATRSDNYDDDDDDECGDDDQ
LPDFEKDDMLSRRTGSYQKPSAAQSFNAFLPKPGAVKHKITPVSGSQSYLKPREQETAPS
PDSFTLSSVTPPPRDAEDTPRKCPQMMDRQEAGSVGVVGHESLIKDETITKSPSPRPHQP
RRPLWQEDDDLPPIFRATSVSDTESMSLIDMRDEEDEMAYLQPHSQSRHEHLHNQYNKLK
EEEDQWQDDLARWKNRRRSASQDLIKKEEERKMMEKLMTADGGPGHRRKSIKTYKEIVEE
KERREQELHEQYCKASTPEEKAGVLQRYALRFTISDAILEKLQLPKLPSAAPPMLTSPLH
QPEKKPTRTTLAEAEAPEPEKTPQTPHSVHIEPKTAQKQALAQPKSPEPSPSETSKAPEV
LSAPTRVPPAPSKPVPLITPKPYSQPKFSQGVRKSVKSDGLIRVNGDSTQRESREKNDRD
SMSSPKVNFSSSPPKPDTESKQKEELVVLEASERQQNVQVSTSDKEKEVVKEEKECSLRP
QQENSKEDTSATLSLSEPEGKQSAPDAMMKRSCVVTTTIVTELTQTHPVPPNEASSTEQL
DSVHSSCDVSLSVESSKAEQTSYSLSVTDSSHTSNSSRLRWEFFAPTEGIDYSIDCIETP
MLNLAKRVDHWTWDPNEERRRQERWQQEQERLLQEKYQREQEKLKEEWERAQREVEEEER
RHHEEEMRILEETVTPLTPRTSALASSTVTEAPSLSQPSAPHDTIVLSLADWERKQEMLE
KQAQTNQSNGLTHSPDQVITPAQQNGQRTEPQESQTATPQLQFIQDGSWSCKTKDRQEDL
KKTASLDRKQSPPQSQTTRMRRTGSCENVLGTHPSKSPTPSQDTPPPSPSRSVSGKKLCS
SCAHPLGKGAAMIIESLGLYFHIQCFKCGICKGLLGDTSAGTDVRIRNGLLNCQECYIKS
RAAGQPTTL
NT seq
5610 nt
NT seq
+upstream
nt +downstream
nt
atggccagtcccggagacgattcggcttcaaatgcccctctggatcaagccgaatctgct
gacgctgccccggaaccagcgtttcaagaggctcaaaaatggatcgaggcagtgacggga
agaagtttctgtgacaaggactttagaagcggcctggagaacggcattctgctctgcgag
ttgctgagttcaatcaaaccaggccttgtgaaaaagatcaatagacttccaacacccatc
gcagggctggataatctaaccatgtttctgagaggatgtgaagagctgggattgaaggga
tcacagctgttcgatcccggagacctgcaggatacgtcgatacgagctaacttaacgggc
tctgactgctgcagaaagctgaagaatgtgctcataaccatatactggcttggtaaagct
gctaacagctgcacaacatacaacggccccacactcgacctgaaagagtttgaggggctt
ctttccatgatgcgaaaggagtgtgttaatgaagatttagactcccctaagcgcagtata
agggacagcggttacattgacagctgggaatcagagcgctctgattcgctgtctcctccg
aggcatggccgtgatgattcgtttgacagtctcgactcatttggctcacgatcgcagaac
acaccctccccggacacagttattcgctgcaacagtgatgactctgaaggcgatgctgga
cataggaaattgccagacgtacgtaaggatgacatgtctgcccgccgcgtgtcctacaaa
gagcctcgcgcagctctaccctttaatcagtatctgccaaacaagagcaaccagaccaac
taccttccagctcccctgaggaagaggaggagcgaccgagaggaagacaggaggagtctg
agcaactccacatctcctgtaggaggagaaagacctctcagacaagagtgcttagaagtg
ttaaaagaggaggctgtcgtgtctcgaagccttgcgatccagaaaaattccacctgggtg
aatgaggaaagggcggagtttgaggaggcagagcttaagaaaataagaaagctggaaaag
gcgggaataaaagtattacctgcctctgtgcgatatagcagtccaattgtgaaccccgtg
gagggcagtaaagctaaagctccttcacctgacatcattctgcgtcgtgacaatgagttc
atgcgtgccgctgctccacaacagtgggattcgaatgatgaggacgatgatgaagaggca
gaacgaaaggttccagatgtccgtaaggatgatcttgcttctcgcagggcacgaatgaat
cagtttaaacccagcgtggcacatcacttcctgccaggctcttgcagctggaaggaccga
gaaaaatgggagggtatcagactggcatcccagcatgccgtgttggagaggatggagaag
atggaacaggagaaaagaagtcaggctgactccgcctccccggaggtgccaattataatt
cgcaaggacaatcctttcctaaatcctgaaaaagacaggggaaaagaggggaatgaggaa
gatgagaaagagctagaagggaagatagttgttccaaacccactcaaagatgatcttgcc
aggagacgggctgggagagggccacaccctcccaaagatcctcatcagtcattggcccag
acttccatcactcagtcagacctggagacatggcagaggctcaagatgaatacagatagc
agtgagtctgaatccactcctgctgaagtgtcaatcataactcgcaaggacaaccccttc
ctgacccctgagaaagacagtgagagcgagcgggaaaaggaggagggaacagacagagag
aaaggggcgagggtggcgatgcccaatgtaaagacagatgacctggccagaaggcggggc
caaagtgggcctgtcccacagagggacccccggcagtcattggctcaaacaaccatcact
cagtcagacctggagaaatggcaaaggctcaagatgaatacagagagcagcgatgaccct
attgtccctctgtgtcagacgtgtcttgagaaaggctgcctctctgtttcctccaagatg
aaggttgccaagaacgacctggccagttgccgagaacgttcctccggtgaacggcggcgt
tttgtgacatttgggggtgtgacagagatggagagtacttcctggaaagaggaggaggat
gaggaagggggagagggacagggggacgaggcagagaagcttcgatatctcctctcgatg
gcacctgttgctgtgcccaccataggcctgggctccatactgacaaagagagccgtgggc
agtggagatgcaaaccctgagcctcctcccatcatgccccctgaacctccgaaccctgtt
atgtttgaccttaaaaggcctttgacctccaccgagcgcagagcgctggaggaggaactg
gctcagaaagcaaaggatgagagggaggactatgaagaggatgaagaagaagaagaagaa
aaagagaggcaaccagatatagaaaaggatgacatgctagctcgtagaacaggagcattt
ccgaagccaggaagcgggacttcgtttaacagattcctcccgcagccagcatccaagaga
gagggtgctacggcagcttccttagcgcagaaaggaacgagtggagacagagatctccaa
tactttgaaagaagcataaagacaaagagatccaagatcggacagagaaatgaaccagtc
gttccagttgctgtagttacagaaaagagctccgacattgcacattcttctacaactaac
gccactcgctctgacaattacgatgatgatgatgatgatgaatgtggggatgatgatcag
ctgccagattttgagaaggatgacatgctttcgcgaagaaccggatcttaccaaaagcca
agtgcagcacagtcttttaatgcttttctgcccaaacctggcgctgtcaaacataaaatc
actccagtcagtggatcgcagtcgtacctcaagccaagagagcaagagacagccccgtct
ccggacagcttcacccttagctctgtgaccccgcccccaagagatgctgaggacacgcct
aggaagtgccctcagatgatggacaggcaggaggcgggctctgtgggtgtggtgggacat
gaaagtcttattaaagatgagactattaccaaaagcccctcccccagacctcaccaaccc
cgtcggcccctttggcaggaagatgatgatctccccccaatattcagagctactagtgtt
tctgacacagagagtatgagtttgattgacatgcgtgatgaagaggatgagatggcctac
cttcagccacacagccaatcacgacatgagcacctacacaaccagtacaacaaactcaaa
gaggaggaggaccagtggcaggacgacttggcccgctggaagaatcggaggcgaagtgca
tctcaagatttgatcaaaaaggaagaagaaaggaagatgatggagaagctaatgacggcg
gacggaggacctggccatcgcaggaagagtatcaagacatacaaagaaatcgtagaggag
aaagaacgtagggaacaggagctacatgaacaatattgtaaggcctccaccccagaagag
aaagcaggtgtgcttcaacgctatgctctccgtttcaccatcagcgatgccatattagag
aaacttcagctccccaaactaccttctgctgctccaccaatgctcacgtcacctcttcat
caacccgagaaaaagccgacacgcaccaccttggcagaagcagaggccccagagcctgaa
aaaacaccccaaacaccccacagtgttcatatagagccgaagactgcacaaaaacaggca
ctggcacagcccaaatcccctgaaccatcgccttctgagacctccaaagctccagaagtc
ctgtcagcacccacacgagttcctccggctccatcgaagcctgtacccctgatcacccca
aaaccctacagccagcccaaattcagccaaggcgtccgcaaatcagtgaagagcgatggg
ctgatacgtgtgaacggtgacagcactcagagagagagcagagagaagaatgatagagat
tctatgtcgagtcctaaagtcaacttctcttcctcacccccaaagcctgacacggagagt
aaacaaaaagaggagctcgttgttttagaagcctcagaacgccagcaaaatgtgcaggtg
tccacttctgacaaggagaaggaagtcgtaaaggaggaaaaagagtgttctcttagacct
cagcaagagaacagcaaagaagacacttcagccacactgtcgctctcagaaccagaagga
aagcagtcagcgcctgacgcgatgatgaagcgcagctgcgttgtcacaacgaccatagtg
accgaactcactcagacacatcccgtcccgccgaacgaagcgtccagcaccgagcagctg
gattcagtccatagttcatgtgatgtgagtttaagtgtggagtcaagcaaggccgagcag
acttcatactcgctctcagtgacagattcctcgcatacctctaatagctctaggttacgc
tgggagttcttcgctccaacagaggggatcgactactccattgattgcattgaaacccca
atgttgaaccttgcaaaaagggttgatcactggacgtgggacccaaatgaagagcgtagg
cgacaggagaggtggcagcaggagcaggaacgcctgctgcaggagaaatatcagcgagag
caagagaagctaaaggaggagtgggagagagctcagagagaagtggaagaggaggagagg
agacaccatgaagaggaaatgcggatactggaggaaaccgtgaccccactgacccctcgc
acctcagccttagcatccagcacggtgacagaggctccgtccctcagccagccctcagcc
ccacatgacaccattgtcctctctttggctgactgggaaaggaaacaggaaatgttggag
aaacaggcacagacaaaccagagtaacggactcacacacagccctgatcaagtaatcaca
ccagctcagcagaacggtcagagaactgaacctcaggagagccaaacagctacaccgcag
ctgcagtttatacaggatggctcttggagctgtaagactaaagacagacaagaagattta
aagaaaactgcctcactggatcgtaaacagagtccacctcagagccagaccacaaggatg
aggaggactgggtcgtgtgaaaatgttttagggacacacccatcaaaatcacccacacca
tcacaagacacgccacctccatcacccagcaggtcagtaagtggaaagaagctttgctcc
agttgtgcacatcccttgggtaaaggagcagctatgatcattgagagcttggggttgtac
ttccatattcagtgttttaagtgtggaatatgtaaagggttacttggagacacaagtgct
ggaactgacgtcagaattcgaaatggacttcttaattgtcaagaatgctacataaaatca
agagctgctggccagccgacaacattgtga
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