Puntigrus tetrazona (Sumatra barb): 122344676
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Entry
122344676 CDS
T08985
Symbol
gtf2h2
Name
(RefSeq) general transcription factor IIH subunit 2 isoform X1
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03022
Basal transcription factors
ptet03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122344676 (gtf2h2)
09124 Replication and repair
03420 Nucleotide excision repair
122344676 (gtf2h2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptet03021
]
122344676 (gtf2h2)
03400 DNA repair and recombination proteins [BR:
ptet03400
]
122344676 (gtf2h2)
Transcription machinery [BR:
ptet03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
122344676 (gtf2h2)
DNA repair and recombination proteins [BR:
ptet03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
122344676 (gtf2h2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
VWA
HscB_4_cys
Motif
Other DBs
NCBI-GeneID:
122344676
NCBI-ProteinID:
XP_043094140
LinkDB
All DBs
Position
5:complement(10042534..10046774)
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AA seq
392 aa
AA seq
DB search
MDEEPERAKRWEGGYERTWEVLKEDESGSLKATVEDILFQAKRKRVFESHGQVRLGMMRH
LFVIIDSSRSMEDQDLKPNRLTSTLKLMEYFVEEYFDQNPISQIGIITTKNKRAEKLTDL
AGNPKKHIAALKKAVDATCVGEPSLYNSLNLAMQTLKHMPAHTSKEILVVFSSLTTCDPA
NIYELIKTLNGLKIRVSVIGLSAEVRVCTILTRETGGSYNVILDESHFKELLMLHVKPPP
ASSSSECSLIRMGFPQHVIASMSDQDAKPSFSMSHLDSAGEPGLTLGGYYCPQCRAKYTE
LPVECKVCGLTLVSAPHLARSFHHLFPLEAFQETPLEEYEGERFCEACQGELKDKSVFTC
LTCKKVFCVECDLFIHDTLHCCPGCMQTDRTS
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagaaccagagagagcaaaacgctgggaaggaggatacgaacgaacatgggag
gtcctgaaggaggatgaatctggatctctcaaagccactgtggaggacattcttttccag
gcgaagaggaaaagagtctttgagagtcatggacaagttcggcttgggatgatgcggcac
ctctttgtgatcatagactcgtctagatcaatggaagatcaagacctgaagcccaacagg
ctcacctcaaccttaaagctgatggagtattttgtagaggaatactttgaccagaatcca
atcagtcagatagggatcattaccactaagaacaagagggcagagaagctcactgatctt
gcagggaaccctaagaagcatatagcagctctgaagaaagccgtggacgccacgtgtgtt
ggggaaccatctctctacaactctctgaacttggccatgcaaactctaaaacacatgcct
gctcacacaagcaaagagatcctggttgttttcagcagtcttactacctgtgacccagcc
aacatctacgagctgatcaaaactctgaacggtttgaagatcagagtgtctgtgatcggt
ctgtcggcagaggttcgggtgtgcaccatcctcacaagagaaactggaggatcctacaat
gtaattctggacgagagtcattttaaagagctgctgatgctgcatgtgaagccgcctcca
gccagctcctcctctgagtgctccctcattcgcatgggtttcccccagcatgtcatagcc
tccatgtctgatcaggatgccaagccttcgttcagcatgtcgcacctagacagcgctggt
gaaccaggactcactcttggtggctattactgcccgcagtgcagagccaaatacactgaa
ctgccagtggagtgtaaagtgtgcggtctgactctagtttccgctcctcaccttgcacgt
tcctttcatcacctcttcccccttgaggccttccaggagacccccctggaagagtatgag
ggcgagaggttctgtgaagcttgccaaggagagttgaaagacaaaagtgtgtttacttgt
ctaacatgtaaaaaagtgttctgcgtggagtgcgatctcttcatacatgacacactgcac
tgctgtcctggctgcatgcagactgacaggacgtcctga
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