Puntigrus tetrazona (Sumatra barb): 122345328
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Entry
122345328 CDS
T08985
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122345328 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ptet03041
]
122345328 (prpf4)
Spliceosome [BR:
ptet03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
122345328 (prpf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_CDC20-Fz
WD40_Gbeta
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_Aladin
WD40_MABP1-WDR62_1st
Beta-prop_EML
PRP4
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
Beta-prop_Vps41
Beta-prop_WDR41
Beta-prop_IFT140_1st
Ge1_WD40
WD40_like
Beta-prop_DCAF12
WD_LRWD1
Beta-prop_SPT8
Beta-prop_WDR35_TULP_N
Beta-prop_WDR11_1st
DUF7779
Motif
Other DBs
NCBI-GeneID:
122345328
NCBI-ProteinID:
XP_043095312
LinkDB
All DBs
Position
5:complement(23616176..23621160)
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AA seq
507 aa
AA seq
DB search
MSDEDEVPVVKKARIFYGSLEEKEKERLSREGLSTASRDAVKAGIEAGHINISSGESMEL
EERVSERQAEVLAEFERRKRARQITVSTDDVEVKACLRALGEPITLFGEGPAERRERLRN
ILSVVGPDALKKSKKEDDRAKRSQDEYQQTWYHEGPSSLKEARVWLAKYSLPRAVQRLDA
ARAHKEIPESTRTVKQQELHKTLRNVNNFCSQIGDDRPISHCQFSPNSKLLVTASWSGLC
KLWKVPDCTLVRTLRGHNTNVGAISFHPQATLTLEESDVNMASCAVDGSVKLWSLDSDEP
VADIEGHSMRVARVAWHPSGRFLGTTCYDNSWRLWDLEAQEEILHQEGHSKGVHDLHFHP
DGSLAGTGGLDSFARVWDLRTGRCIMFLEGHHKEIYSINFSPNGFNVATGSGDNTCKVWD
LRHRRCLYTIPAHENLVSSVKFQPNDGHFLLTGAYDNTAKVWTHPGWSPLKTLAGHEGKV
MGLDLSPDGQLIATCSYDRTFKLWMAE
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatgaagacgaagttccggttgtgaaaaaggccaggatcttctatggaagcctt
gaagaaaaggaaaaggagcgtctcagccgtgaaggattgtctactgcttccagagatgcc
gttaaagctggcattgaggctggacatattaatatctccagtggtgagtccatggagctg
gaggagcgtgtgagtgagcgacaggctgaggtgctggcagagtttgagcggaggaagcga
gcgagacagatcacggtctccactgacgacgtggaggtcaaggcctgcctccgagctctt
ggcgagccaatcacgctatttggggaggggcctgcggagagacgagagagattgaggaac
attctctcagtagttggtcctgatgctttgaagaaatcaaagaaagaggatgacagagca
aaacggagtcaagatgagtatcagcagacctggtaccatgaaggaccttcgtctctgaaa
gaggcccgtgtttggttagccaagtattcactacccagagcagtgcaaaggttggatgct
gcacgggcacataaagaaattccagagtctacgagaacagttaaacagcaagagcttcac
aagaccctacggaacgtgaataacttctgcagccaaattggtgatgaccgtccaatatct
cactgtcagttcagccccaactctaagctgcttgtgactgcgtcatggagtggcttgtgt
aaattgtggaaagtcccagactgcacacttgtacgcacattaagaggtcacaataccaat
gtgggagcgattagctttcaccctcaggccacgctcacactcgaggagtccgatgtcaat
atggcctcctgtgctgtggatggatccgttaagctgtggagtttagacagtgatgagcct
gtagcagacattgaggggcactctatgagggtggctcgagtggcctggcatccctctgga
cgctttctgggaacaacttgctatgataactcatggcgactttgggatcttgaagcccaa
gaagaaattctgcatcaggagggtcatagtaaaggggtccatgacctgcacttccaccca
gatggctctctggcaggaactggtggtttggattcgtttgctcgtgtgtgggacctgcgg
acgggtcgttgtatcatgttcctggaaggccaccacaaagagatttatagcatcaatttt
tcaccaaacggttttaatgtggcaacaggaagtggagataacacctgtaaagtgtgggac
cttcgtcatagaaggtgcctgtacaccattcctgcccatgagaaccttgtgtcttcagtc
aagttccaacctaacgatgggcactttttgctgactggtgcatatgacaacacagccaaa
gtgtggacccatcctggctggtcacctctaaagactctggcgggtcacgaaggcaaggtt
atggggcttgacctttcacctgatggacagctcattgccacctgctcttatgaccggacc
ttcaaactctggatggcggaatga
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