Puntigrus tetrazona (Sumatra barb): 122345460
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Entry
122345460 CDS
T08985
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122345460 (exosc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptet03019
]
122345460 (exosc1)
Messenger RNA biogenesis [BR:
ptet03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
122345460 (exosc1)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
122345460 (exosc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
PCB_OB
Motif
Other DBs
NCBI-GeneID:
122345460
NCBI-ProteinID:
XP_043095555
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All DBs
Position
1:complement(26712846..26717701)
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AA seq
194 aa
AA seq
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MSPMKLCVPGERLCSTEDCIPGTGTYLRHGYIFASLAGYVLRKNEGEELPVISVVRETEA
QLLPDVGAIVTCKVTSINPRFAKVHILYVGSTPLKDRFRGTIRREDVRATEKDKVETYKS
FRPGDIVLAKVISLGDVQSNYLLTTAENELGVVVAHSEAGAQMVPISWCEMQCPRTHAKE
FRKVARVQPEYLQA
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcccatgaagctgtgtgttccaggtgaaaggctctgcagcacggaggactgtatc
cccggcaccggcacgtatctgcggcacggctacatcttcgcgtcgctcgcgggatacgtg
ctgagaaagaacgagggagaggagctgccggtgatttcagtcgttagggagacggaagcg
cagctcttgcctgacgtcggtgccatcgtcacctgtaaggtgacgagtatcaacccacga
tttgctaaagtccacatcttatatgtggggtcgacgccgctgaaagacaggtttagaggc
acgatcagaagagaagacgtgagagcgacggagaaagataaggtggagacgtacaaaagc
ttcaggccaggcgacattgtcctcgcaaaagtgatctctttgggcgacgtgcagtcgaac
tacctgctgaccacggcagagaacgagctgggcgtagtcgtggcccacagcgaggcgggc
gctcaaatggtgcccatcagctggtgcgagatgcagtgtccacgcacgcacgccaaagag
tttcgcaaggtcgcgcgggtacagccggagtacctgcaggcctga
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