Puntigrus tetrazona (Sumatra barb): 122345896
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Entry
122345896 CDS
T08985
Symbol
tnpo1
Name
(RefSeq) transportin-1
KO
K18752
transportin-1
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122345896 (tnpo1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptet03019
]
122345896 (tnpo1)
03009 Ribosome biogenesis [BR:
ptet03009
]
122345896 (tnpo1)
Messenger RNA biogenesis [BR:
ptet03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
122345896 (tnpo1)
Ribosome biogenesis [BR:
ptet03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
122345896 (tnpo1)
Pre-60S particles
122345896 (tnpo1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT_EZ
HEAT
TPR_IMB1
HEAT_GCN1
HEAT_2
Arm
Vac14_Fab1_bd
TOR1L1_N
Cnd1
IBN_N
TPR_IPO5
HEAT_EF3_N
TPR_DNAAF5
HEAT_MROH2B_C
PDS5
Adaptin_N
CEP104-like_TOG
HEAT_GCN1_C
MMS19_C
HEAT_Maestro
UNC45-central
Dopey_N
TPR_TTI1_C
VPS15-like_hel
DUF3689
Motif
Other DBs
NCBI-GeneID:
122345896
NCBI-ProteinID:
XP_043096354
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All DBs
Position
5:5959832..5982816
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AA seq
891 aa
AA seq
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MECQWKPDEQGLQQILQLLKESQSPDTSTQRSVQQKLEQLNQYPDFNNYLIFVLTKLKTE
DEPTRSLSGLILKNNVKAHYQNFPNGVSDFIKNECLQNIGDSSPLIRATVGILITTIASK
GELQNWPELLPKLCLLLDSEDYNTCEGAFGALQKICEDSAEILDSDMLDRPLNVMIPKFL
QFFKHSSPKIRSHAIACVNQFIISRTQALMLHIDPFIENLFALAGDEEPEVRKNVCRALV
MLLEVRLDRLLPHMHNIIEYMLQRTQDQDENVALEACEFWLTLAEQPVCKEVLCGHLPKL
TPVLVNGMKYSDIDIILLKGDVEEDEAIPDNEQDIRPRFHRSRTVAQQHEGGDSIEEEED
DEDDLDDDETISDWNLRKCSAAALDVLANVFRDDLLLHILPLLKELLFHPEWLIKESGIL
VLGAIAEGCMQGMIPYLPELIPHLVQCLSDKKALVRSITCWTLSRYAHWVVSQPPDIYLK
PLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFGKYQHKNLL
ILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNQLKDEDKDLFPLLECLSSVATALQS
GFLPYCEPVYQRCVNLVQKTLAQAVLHQTQPEFYEAPDKDFMIVALDLLSGLAEGLGGNI
EQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIANFMPILGTNLNP
ELISVCNNATWAIGEISIQMGSEMQPYVPMVLQQLVEIINRPNTPKTLLENTAITIGRLG
YVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMITVNPGGVVQDFIFFCDAV
ASWMNPKDDLREMFYKILHGFKNQVGDENWRRFSDQFPLPLKERLAAFYGV
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atggagtgccagtggaaacccgacgagcagggacttcagcagatcttacagctgctcaag
gaatcgcagtcccccgacacatccacgcaaagatccgtccaacaaaaactcgagcagctc
aatcaatacccggacttcaacaactacctgatatttgtgctcacaaagctgaagacagaa
gacgagcccactcggtctctcagcggtctcattttgaagaacaacgttaaggcccattac
cagaacttcccaaacggtgtgtctgacttcatcaaaaatgagtgcctgcaaaacatcgga
gactcctcgccgctcattagagccacagtgggtattctgatcacaactatagcctctaaa
ggggagttacagaactggccggagcttctacctaaactctgtttactgctggactcagag
gactataacacttgtgaaggggcttttggagctctgcagaagatctgcgaggactctgct
gagatcctggacagcgacatgctggaccgaccgctcaacgtgatgatccccaagtttctg
cagttcttcaagcacagtagccccaagatcaggtctcatgccattgcctgtgtgaaccag
ttcatcatcagcagaacacaggccctgatgttgcacatagaccctttcatcgagaacctg
ttcgcactggcaggtgatgaggagcccgaagtgaggaagaatgtgtgcagagctttagtc
atgctcttggaagtcagattggaccgtctccttcctcacatgcacaacatcatcgagtac
atgctgcagaggacacaagatcaggatgaaaatgtcgctctggaggcctgtgaattttgg
ctcacgctcgccgagcagcctgtgtgtaaagaggttctgtgcggacacctgcctaaatta
acaccagttcttgtgaatggaatgaagtactctgacattgacataatcttgttgaagggt
gatgtcgaagaggacgaagcaatcccggacaacgagcaggacattcgccccaggtttcat
cgctcacgcactgtggcccaacaacacgaggggggagactccatcgaggaagaggaggat
gacgaagatgatttggatgatgacgaaaccatctccgattggaacttgaggaaatgttct
gctgctgcgctagacgtcctggcgaatgttttcagagacgatttgctgctgcatattctc
cctttattgaaagaactactgtttcatccagagtggcttattaaagagtctggcatactc
gtactgggagccatcgctgaaggctgtatgcagggaatgatcccttacttgccagaattg
attcctcatttggtacagtgtctgtctgacaagaaggcgctggttcgatccatcacttgc
tggactctaagccgctacgcacactgggttgttagccagccccccgacatctacctcaaa
ccgctcatgactgaactgctcaaacggatacttgacagcaacaagcgtgtccaagaggcc
gcctgcagtgcctttgctaccctggaagaggaggcttgcactgagctggtgccgtacctc
gcttatattttggacacgttggtttttgctttcggtaaataccagcacaagaaccttctc
atcctctatgacgccattgggactctggctgactctgtgggtcaccatctcaacaaaccg
gaatatattcagatgctgatgcctccattgattcaaaaatggaaccagctaaaggatgaa
gataaagatctttttcctttgcttgagtgtctctcgtctgtggccactgccctgcagagc
ggcttcctgccatactgtgaacctgtctaccagcgctgtgtcaacctggtccagaaaaca
ctcgctcaggccgtgctccaccagactcagcctgagttttacgaagctcctgataaagat
ttcatgatcgtggctctggatctgctcagcgggttagcagagggtcttggagggaacatc
gaacagctagttgcccgtagcaacattctcactctcatgtaccagtgcatgcaggataag
atgccagaggttcggcagagttctttcgctctgttgggagatctgaccaaagcctgcttc
cagcatgtcaaaccttgcatcgctaacttcatgcctatcctaggcacaaacctgaatccg
gagttgatatcagtctgcaacaatgcgacatgggccattggagaaatatccattcaaatg
ggttctgagatgcagccgtacgtcccgatggttttacagcagctcgtggagatcataaac
agacccaacacacccaagacgctgctggagaatacagcaataacaattggtcgtcttggt
tacgtttgtcctcaagaggtggcacccatgctacagcagtttataagaccctggtgcacc
tctcttcgcaatataagagacaatgaagagaaagactctgcgttcagaggaatctgcacc
atgatcacggtcaaccctggtggcgtggtgcaggactttatatttttctgtgacgctgta
gcatcctggatgaacccaaaagacgatcttcgagaaatgttctataagatattgcatggg
tttaagaaccaggttggagacgagaattggagacgcttttctgaccagtttcctcttcca
ctcaaagaaagacttgcagccttctatggggtgtag
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