Puntigrus tetrazona (Sumatra barb): 122345910
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Entry
122345910 CDS
T08985
Symbol
arhgef12b
Name
(RefSeq) rho guanine nucleotide exchange factor 12 isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet04270
Vascular smooth muscle contraction
ptet04625
C-type lectin receptor signaling pathway
ptet04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
122345910 (arhgef12b)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
122345910 (arhgef12b)
09153 Circulatory system
04270 Vascular smooth muscle contraction
122345910 (arhgef12b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ptet04131
]
122345910 (arhgef12b)
Membrane trafficking [BR:
ptet04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
122345910 (arhgef12b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PH_13
PDZ_2
SOS1_NGEF_PH
Pept_S41_N_bact
Motif
Other DBs
NCBI-GeneID:
122345910
NCBI-ProteinID:
XP_043096365
LinkDB
All DBs
Position
5:22978804..23045715
Genome browser
AA seq
1441 aa
AA seq
DB search
MSGTQSTLAERFPKKASRTGSILSKDHPPDKKPKSDKASVPPSHEFDPTELPVQSVVSDG
RPESCGLVQRCVIIQKDENGFGLTVSGDNPVFVQLVKEDGAAMRAGVQTGDRIIKVNGTL
VTHSNHVEVVKLIKSGSYVALTVLGRPPGLPQIPLSDGEGEEGPLFPLTSPHSPGPIGPD
RSSSSPSPSERKQTSLSVWAMTEEYSRNPTPKLLKEIQDAKKHIPQHQEQLSKPSGTGPD
GSLSPRQGEGEQEDGGGDSDRPPSWQGDAGMDPPWTNNTTAPITPSPVPERTCQRETPCH
SPKTTPRDSLNSCPSPDAEDTPDLDSQSSVGSPSYRPVAHIIGAEDEDFDREQEQMNGQC
SCFQSIDLLKSRPAHLAAFIHHVVSQFDPAPLLCYLYAELYKQTSSKDTRRILMDTFFVD
KTASLKVTVPESIIADLERTAHSINAERKRPEPISEDIHRQYVQQLQDTLLPDIQKNLED
FRHKRSMGLTLAEAELARLDTERMRERVALEKERSFAEHIISKIEDVLLTSQATEEDKCS
TMQFVILSYMKQLGVKVKESGRLEHKPKLMNLFPKIKKGIKLEKDGSEEKSKKTRFSSVF
PQRRPSKIETPAIGRAQGPRQHPTKPQLPLGTGEQADGSSPPVRSSLSSEGSDGTNTITS
PPYSAPAAQGTDVISRESDTGGLPSSVPPRPGDGVVPGEPQDSSSSNTHVDCTLEHLPEE
EAETDKTQDTGTPRPDGCRIELLGSVEMQSEDDQCAEVELEPPNWQTLVRRDVLSTLTSQ
EIKRQEVINELFYTERAHFRMMKVLENLFYQPLIREAILPSADIKNIFSNLEEIVQLHMS
LMEQMTVVRKKNEMPIIDSIGDDLLSWFSGEEEAKIKRAAGMYCSNQPFALELIKSKQKK
DQRFNSFIQEAESNRHCRRLQLKDIIPVETQRLTKYPLLLENIAKYTEDPEERSKVKQAG
ECCRKILTHVNQEVKEAENKQRLEDYQRRLDLSSLKQSENPMIAEFKTLDLTKRKMVHEG
PLSWKVNKDKTIELYTLLLEDILVLLQRQDEKLILKCHSKNLAGTAETKHIFSPIIKLST
VMVRSVATDNRSFFVISMSDNGAQIYELMAQTVSEQKTWQCLITERADCMKTKLHNIIPL
PQTDGEREAVELINSGVQKLNKDSEPISLVSIQSAEKDGTEVTPTPPSSTNPFETKSDGE
DEEEENSLQDQAEDDEAFVVADMTDRLTFLKQRSRLGIAIDEDEAEAFELQPLRADEALR
TLATLRQLLINHMSSQEDADKEQQEDVARTGSQQGPEDSTTIGSAVENGSERAENRGENA
QELPSGDTGFFETSEDCVSAGSYMVLEVYGGSGESSTDDDVQGSSGEPVAGGDSGIDLKK
LLSSSSQSSGGPNLNRQIMTHIRLLQANLQHLKDTEIKYNQLRQRLSEEPATDTEENKEK
S
NT seq
4326 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcacacagtccacgcttgctgagaggtttcccaaaaaagcgagcaggacagga
agtattctcagcaaggaccatcccccagacaaaaagcccaaaagcgacaaggcgtcagtc
cccccctcgcacgagtttgaccccacagagcttcctgttcagagtgtagtatccgatgga
aggccagagtcctgcgggcttgtgcagcgttgcgttatcatccagaaagatgagaatggc
tttgggctgacagtgagcggcgataaccctgtgtttgtacagcttgtaaaagaggatggg
gctgccatgcgagctggtgttcagacgggtgaccggatcataaaggtcaatgggacatta
gttacacattcaaatcatgtagaagttgtaaagctaataaaatcgggctcatacgtggcc
ctgacagttctggggagaccgccgggcctgcctcagatacccctctcagatggcgagggc
gaggaggggcccctcttccctctcacctcccctcactccccggggcccatcggtccagac
cgctcgtcttcctcccccagcccctcggagcgcaaacagacctctctgtctgtatgggcc
atgacggaggagtacagcaggaaccctacacctaaactactgaaggaaatccaggacgcc
aagaagcacattccacagcaccaggagcagctcagcaagccctctgggactggaccggat
ggctccttatctccaaggcaaggagaaggagagcaggaggatggagggggagattcggac
cgacccccttcatggcagggcgatgctggaatggatccaccgtggaccaacaataccaca
gcccccatcacccccagtcctgtcccagagagaacatgccaaagagagaccccctgccac
agcccaaagaccacaccccgagacagcctcaactcctgtccttcaccggacgccgaagac
acacctgaccttgattctcagtcaagcgtggggagcccctcctatcgtccggtagcacac
atcatcggtgctgaggatgaagactttgacagagaacaggaacagatgaatggccagtgt
agctgttttcagagcatagatctcctgaaatctcggcctgctcacctggcagctttcatc
catcatgtggtctctcagtttgaccctgcgccgctgctgtgctacctctatgctgaactt
tacaaacagaccagctccaaagacacacgacgaatcctcatggataccttcttcgtagat
aaaacagctagcttgaaagtaacagtgcccgaatccattattgctgacctggaacggact
gcgcactcaattaatgcagaacgtaagaggccggagcccatctcagaggacatccaccga
caatatgtgcagcagctgcaggacacactattacctgacatccagaagaacctagaggac
ttcaggcacaagcgcagtatgggtctgaccctggctgaagcagagctagcccgcctggat
acagagagaatgagagaacgtgtcgccctggagaaagagcgatcctttgcagagcacatc
atctcgaagatagaggatgtactattgacgtcacaggccacagaggaagataagtgtagc
accatgcagtttgtgatactgtcgtatatgaagcagctcggcgtaaaagtgaaggagtct
ggaaggctggagcacaagcccaagctgatgaatcttttccctaagataaagaaaggtata
aagcttgagaaagatggaagcgaggagaaatcaaagaaaacacggttttctagtgtcttt
cctcagagacggccgagcaagattgaaactccagcaatcggtagggctcaggggccaagg
cagcatcccacaaagcctcagctgccgttgggcacaggagagcaggcagacgggtcgtct
cctcccgtacggagcagtctgtcgagcgaaggctcagacggcactaacacgatcacgtca
cccccttacagcgctccagcagcacagggcacagacgtcatcagccgagagtctgacacc
ggtggacttccttcttctgtgccacccagaccgggagacggtgtcgtcccgggggagccg
caggactcgtcctcttcaaacactcacgttgactgtacactggagcatctaccggaggag
gaagcggagacagacaagacgcaggacaccggcacccccaggcctgatggttgcaggata
gagctgctgggctctgtagagatgcagagtgaagatgatcagtgtgccgaggtcgagctg
gagcctcctaactggcagacgctggtgagaagagacgtcctgtccacacttacctctcag
gaaatcaagagacaggaagtcatcaacgagctgttctacacagagagagcgcactttcga
atgatgaaggttctggagaatttgttttaccagccgctgatccgagaggccatcctccct
tctgcagacatcaaaaacatcttcagcaaccttgaggagatcgttcagctgcacatgtct
ttgatggaacaaatgactgtggttcggaagaaaaatgagatgccgatcattgactcaata
ggagatgatctgctttcctggttcagtggagaagaggaggcgaagatcaagagagctgct
ggcatgtactgcagtaatcagcctttcgctctggaacttatcaagagcaaacagaagaag
gaccagcgcttcaactccttcatacaggaggcagagagcaaccgacattgtcgcaggctg
cagttaaaggacattattcctgtggagacgcaaagactcacaaagtatcccctcctgctg
gagaacatcgccaaatacacagaggatcctgaggagagaagtaaagtaaagcaggctggt
gaatgctgtagaaagattctcactcacgtcaaccaggaggtgaaggaagctgagaacaaa
cagaggttggaggactaccagagacgattggacctgtcctcgctgaagcagagcgagaac
cccatgatcgcagagttcaagaccctggacttgactaagaggaagatggtgcatgaggga
ccgctgtcctggaaagtcaacaaagataaaactattgagctatacacattgctgctggag
gatatattggtgctacttcaaaggcaagatgagaagctgatcctaaaatgccacagtaag
aatctggcaggcaccgctgagaccaaacacatcttcagccccatcatcaaactcagcact
gtgatggtgcgctcggtcgccaccgacaacaggtcattctttgtgatctctatgtctgat
aatggagcccagatctatgaactaatggctcaaaccgtatctgagcaaaagacgtggcag
tgtctgatcacagaaagagctgattgcatgaagaccaaattacacaacatcattccatta
cctcagactgacggggaacgtgaagcggtcgagttgatcaactctggtgttcagaagcta
aacaaagactctgagcccatttctttagtgagcattcagtctgcagaaaaagatggcact
gaggtcacgccgaccccaccgtctagcaccaatccatttgagaccaaatctgatggggag
gatgaagaggaagaaaactcactgcaggatcaggctgaagatgatgaagcgttcgtggtg
gccgatatgacggatcgactgacattcctgaagcagcgctcgaggctgggcatcgccata
gacgaggacgaggccgaggccttcgagctccagccactcagagctgatgaagctctcaga
acactggcaacactaaggcagctcctgatcaaccacatgtccagtcaagaggacgcagac
aaagagcaacaggaagacgtggcgaggacgggctctcagcagggtccggaggacagcact
acgatcgggtctgctgttgaaaacggttcagagagggctgagaacagaggggagaacgca
caggaactgccctctggagacacaggtttctttgagacgtctgaggattgtgtctctgca
ggaagttacatggtgctggaggtgtatggaggctcaggcgagagcagcacagatgatgat
gtgcagggcagcagcggggagccggtggccgggggagactcaggcattgacttgaagaag
ctcctctcttcctcctctcagagcagtggaggaccgaacctcaacagacagatcatgaca
cacatacgtctactacaggccaacctgcagcatctgaaggatacagaaatcaagtataac
cagctacgccaaaggctatcagaggaaccagctactgacacagaggaaaacaaagagaaa
agttag
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integrated database retrieval system
