Puntigrus tetrazona (Sumatra barb): 122345977
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Entry
122345977 CDS
T08985
Symbol
sympk
Name
(RefSeq) symplekin isoform X1
KO
K06100
symplekin
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03015
mRNA surveillance pathway
ptet04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122345977 (sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
122345977 (sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptet03021
]
122345977 (sympk)
03019 Messenger RNA biogenesis [BR:
ptet03019
]
122345977 (sympk)
Transcription machinery [BR:
ptet03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122345977 (sympk)
Messenger RNA biogenesis [BR:
ptet03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
122345977 (sympk)
U7-dependent histone pre-mRNA processing factors
122345977 (sympk)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
Adaptin_N
GNC1_N
Cohesin_HEAT
Rep_Org_C
Motif
Other DBs
NCBI-GeneID:
122345977
NCBI-ProteinID:
XP_043096490
LinkDB
All DBs
Position
5:complement(21856983..21867039)
Genome browser
AA seq
1254 aa
AA seq
DB search
MASGAGEQAHGSATSQLYTNENDTAFDMTTSEKVVELLNQAALISTEEKLIVLKQVQELI
INKDPSLLDNFLDEIIAFQTDKSIEVRKFVIGFIEEACKRDNELLLRLIANLNMLMRDES
VNVVKKAILTLTQLYKVALQWLVRTKGVSDMQEACWDMVTQMKEDVLALLDSDNDGVRTH
AIKFTESLIITLSPRTPDSDTPKKQEGDISLDKIPKDHTYIRYDTLCDEGKLALEQLLKF
MVHPAITSINLTTALGSLATLARQRPMFMSEVVQAYETLHANLPPTLAKSQVSSVRKNLK
LHLVSVLKHHSSVDFQGQISTLLLDLGMSQSEITRCTPATVQPRKRLHHEPYVEGKRIKM
EATLVEDDDDKEEPAPVVTPKPSSSAGNQSAIDLTAEFLLPLLNPENVANLVLISMVYLP
EVMPASFQATYTPVESAGTDAQIKHLARLMATQMTAAGLGPGLELCKARDEEMKEEDSGA
GESSSKDPLIIRKLSAVSLGQAISVVGAQPAAYKSPVTEEAPQIKKLPEPILPTTQSKAP
GASGRKKVFKLADVVQPFSEAQIEKLTNMAIKRILQSEKAIAQSGMSHVRVKLLARLVTQ
FEGGKKNDLLQFILEDMRGRSELAFSLLFHEYNEYLSQEPSGSLDSYEHCLFTLLSGLQE
KPEQRDGLFTKLVLEAPVITDSALEVIQRYCEDESRVYLGMSTLKELILKRPSRQYQYLN
VLLNLSSHEKEKVRSTALSFIKRMYEKEHLKDCIEKFALTYMQFLVHPNPPSLLFGAGED
TEVAAPWTEETVRQCLYLYLSLLPLNHRLVHELAAVYTEAIADIKRSVLRVIEQPIRGMG
MSSPDLLLLVENCPKGAETLVTRCLHILTDKVPPSPDLVERVRDLYHKRVPDVRFLIPVI
NGLEKNEVIQALPKLIKLNPIVVKEVFNRLLGTQHSEGSSSMSPLTPGELLIALHNIDSS
KCDMKSIIKATNLCFGEKNVYTSEVLAVVMQQLMEQTPLPILLMRTVIQSLTMYPRLAGF
VMNILARLILKQVWKYPKVWEGFVKCCQRTKPQSYNVLLQLPPPQLASVFERCPEMREPL
LQHVHSFTPHQQAHIPASIMAVLEANSRKPEPEPQPELHHPEIIEEREVPVPKHIPMPAP
VSQAEPPAPTAIVFAEPPPQQQQQQQQQQQQIPATREEEEPMEQGEADRAPLEVMSEPAP
QQMEVSEEASQSNSVSEKTEEPMEESAAVPVDEPDQPKEEAEDVLPEAEESSVD
NT seq
3765 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaggagcgggggaacaagcgcacgggagcgcgacctcccagttgtacaccaat
gagaacgacacagcctttgacatgaccaccagcgagaaggtggtggaactgttaaaccag
gcagccctcatctctacagaggaaaagcttattgttctcaaacaggtgcaggagttgatt
attaacaaagacccttcattgcttgataattttctggatgaaatcatcgcgtttcagact
gacaagtcaattgaggtgcgaaagtttgtcattggattcattgaggaggcatgtaaaaga
gacaatgagcttctgctgaggctgatagccaacctgaacatgctgatgagagatgagagt
gtgaatgtggtgaagaaggccattctgacgctcactcagctgtacaaagtggctttacag
tggctggtgcgcacaaagggtgtctcggacatgcaggaggcatgctgggacatggtgacc
cagatgaaagaggatgttctggcattactagactctgataacgatggagttcgcactcac
gccatcaaattcacagagtctctcatcatcactctgtcgccacggacacctgactctgac
acgcccaagaaacaggagggagacatcagcctggacaaaattcccaaagaccacacgtat
attcgatatgacacgttgtgtgacgagggaaagttggctctggagcagttgttaaagttt
atggtgcaccccgccatcaccagcattaatctcaccactgcactgggatcactggccaca
ctggccagacagcggcccatgttcatgtctgaggtggtgcaggcatacgagacgctgcat
gctaacttgccgccgactctggctaagtctcaagtgagcagtgtgcgcaagaacctgaag
ctgcacttggtgtctgtgctgaagcaccacagcagcgtggacttccagggccagatttcc
accctgctgctggacctcggcatgtctcagagtgagatcacccgctgcacgccagccacc
gtacagccccgtaagagactccaccatgagccctatgttgagggcaagaggatcaagatg
gaggccactctagtggaggatgacgacgataaagaagaaccagctccagttgtcacccca
aaaccatcctcctccgctggcaaccaatcagccatcgatctcactgctgagttcctattg
cctctgctgaacccagagaatgtggccaacctggtgctcatcagtatggtttacctgcct
gaagtgatgccagcctctttccaggccacctacacacctgtagagtcggccggcactgat
gctcagatcaagcatttagccaggctgatggccacacagatgactgcggctggactggga
ccaggcctagagctgtgtaaggctcgagatgaagagatgaaggaggaagacagtggagca
ggtgagtccagctccaaagaccctctcatcatccgcaaactgtctgctgtgtccctgggt
caagccatctcagtggtgggggcacaaccagcggcctataagagccccgtcactgaagag
gcacctcagatcaagaagcttcctgagcccatactgcccaccacacagtccaaggctcca
ggtgctagtggcagaaaaaaagtgtttaaattggccgacgtggtgcagccgttttcagag
gctcaaattgagaaactcaccaacatggccatcaaacggatcctccaatcagaaaaggcc
attgcacagagcgggatgtcccatgtccgtgtgaagctgcttgcacggttggtgacccag
tttgagggtggaaagaaaaatgacttgttgcaatttattttggaggatatgcggggcaga
agtgagctggccttttctctgctgtttcacgagtacaatgaatacctgagtcaagagccc
tctggttctctggacagctatgagcactgtctgttcacgctgctgtccggcctgcaggag
aaacctgagcagagggatgggcttttcaccaagcttgtgttggaggctccggtcattaca
gattcagcactggaggtgattcaacgctactgtgaggacgagtcacgcgtttacctgggc
atgtccacattaaaggagcttatcctcaaacgcccctccagacagtaccagtacctcaat
gtccttctgaacctcagctctcatgaaaaagaaaaggtgcggtccactgctctcagcttc
atcaagcggatgtatgagaaggaacatctgaaggactgcattgagaagttcgctctcacc
tacatgcagtttctggtccacccaaacccaccttctcttctgtttggagcaggagaggac
acagaggtggcggctccctggacagaggagacggtgcggcagtgcctttatctctatctc
tctctccttcccctcaaccatcgtctggtgcacgagctggctgctgtctacaccgaggcc
atcgccgacatcaaacgcagtgtgctcagagtcatcgaacagcctataagaggaatggga
atgagctctcctgacctgctgctgctggtggagaactgtcctaaaggagcagagacgctg
gtcactcgctgtctgcacatactcactgacaaagtgcctccatctcctgatctggtggag
agagtgagggatctttatcataagcgagtgcctgatgttcgtttcctcatcccagttatc
aatggcctggagaagaacgaggtgatccaggctcttcctaaactcatcaaactcaatccc
atcgtggtgaaggaggtgttcaacagactgctgggcactcaacacagtgagggcagttcc
tccatgtctccgctcactcctggagagctcctcatcgccttacacaacatcgactcctcc
aagtgtgacatgaagtcgatcatcaaagccactaacctgtgttttggggagaagaacgtg
tacacctccgaggtgctggccgtggtgatgcagcagcttatggagcaaacccctctcccc
atactgctgatgcgtacagtcatccagtccctcactatgtacccccgcctggccggtttc
gtcatgaacatcctcgcccgtctcatcctcaaacaggtgtggaagtatcctaaagtgtgg
gagggctttgtaaagtgctgccagcgcaccaaaccccagtcctacaacgttctcctccag
ctgcctcctccacaactggctagtgtgtttgagcgctgcccggagatgagggagccgctc
ctgcagcacgttcactccttcacccctcaccaacaagcccacattccagcgtctataatg
gccgttctggaggccaacagcaggaagccagaaccagaaccacaacctgaacttcatcat
ccagaaataatagaagagagagaggtaccggtaccaaagcatataccaatgcctgcacca
gtatcacaagcagaacctccagccccgactgccatagtgtttgctgaaccaccacctcaa
caacaacaacaacaacaacaacaacaacaacagatcccagccacgagggaagaagaagag
cccatggagcagggggaggcagaccgagcacctctggaggtcatgtctgaacccgcgccg
cagcagatggaggtgtctgaggaggcttcacagtccaactccgtttcagagaagacggag
gagcccatggaggagtccgctgccgtgcctgtggatgagcctgaccaacccaaagaagag
gctgaggatgttcttccagaggcagaagaaagcagcgtggactga
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