Puntigrus tetrazona (Sumatra barb): 122347003
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Entry
122347003 CDS
T08985
Symbol
ercc3
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03022
Basal transcription factors
ptet03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122347003 (ercc3)
09124 Replication and repair
03420 Nucleotide excision repair
122347003 (ercc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptet03021
]
122347003 (ercc3)
03400 DNA repair and recombination proteins [BR:
ptet03400
]
122347003 (ercc3)
Enzymes [BR:
ptet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
122347003 (ercc3)
Transcription machinery [BR:
ptet03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
122347003 (ercc3)
DNA repair and recombination proteins [BR:
ptet03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
122347003 (ercc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
AAA_22
Motif
Other DBs
NCBI-GeneID:
122347003
NCBI-ProteinID:
XP_043097896
LinkDB
All DBs
Position
6:complement(4339019..4351472)
Genome browser
AA seq
782 aa
AA seq
DB search
MGKKDKSDRDKKSKKRYYDEEEDDEEVMGGESQEAVPAAAGKQVDESSTKLDEYGAKDYR
LQMLLKNDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAISEPVCRPTHVHEYKLTAYS
LYAAVSVGLQTSDIIEYLQKLSKTSVPDGIVQFIKLCTVSYGKVKLVLKHNRYFVESAFP
DVIQRLLQDTVIRDCRLRSAEGEETELITETISSKSAITKSQQDNGGPSTSQPADGQRTG
SQVPEDIFSYYEQMDKEEEEEEETQTVSFEIRQEMIEELQKRCIQLEYPLLAEYDFRNDT
VNPDINMDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRC
LVLGNSSVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRSW
EAERVMEWMKSQEWGLIILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLN
FLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKF
RACQFLIRFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPK
INTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAYFYS
LVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEDLMFSSREEQQQLLQKVLAASD
LDAEEEVVMGDVGGKPQFSRRAGTMSSMSGADDTVYMEYQTSRSGKSLVGKNIHPLFKRF
RK
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atggggaagaaagataagagtgatagagataaaaagtccaagaagcgttattatgatgag
gaggaggatgacgaagaggtgatgggcggcgagtctcaggaggctgttccagcagctgca
gggaagcaggtggatgaatccagcactaaactggatgagtatggagccaaagactacagg
ctacagatgcttctcaagaacgaccacacttcccggcccctatgggtggctcctgatggt
cacatcttcctagaggctttctctcccgtgtataaatacgctcaggacttcctggtggcc
atatcagagccagtgtgcagacccacccatgtgcacgagtacaagctgacggcttactct
ctgtacgctgctgtgagcgtcggcctgcagacctctgacatcatagagtacctgcagaaa
ctcagcaagacctccgtgccagacggcatagtacagtttataaagttgtgcaccgtgagc
tacggtaaagtcaaactggtcctgaaacacaacaggtactttgtggagagtgcgttccca
gatgtcattcaaaggcttttacaggacacagtgatccgggactgtcgtcttcggtctgct
gagggtgaggagactgagctcatcaccgagaccatctctagcaaatctgcaatcacaaag
tctcagcaggacaacggtggaccgtccacctcccagcctgcagacggtcagcgcacagga
agtcaggtgccggaggacatcttcagttactacgagcagatggataaagaggaggaggag
gaggaagagacccaaactgtatcatttgagatccgtcaggaaatgatcgaggagcttcag
aaacgttgcattcagctggaatatcctctcctggctgaatatgatttccgtaacgacacg
gtgaaccctgacatcaacatggacctgaagcccaccgctgtgctgagaccatatcaggaa
aagagtctgaggaagatgtttgggaatggcagagctcgatctggagtcatcgtcctgcct
tgtggtgctggtaaatcactggtgggcgtcactgctgcctgcacagtgcgtaagcgctgt
ctggtgctgggaaactcatctgtgtcagtggagcagtggaaggctcagtttaagatgtgg
tccactattgatgactcccagatctgccgtttcacttctgacgcaaaagacaaacccatc
ggctgctctgtggccattagtacttattctatgttgggccacaccaccaaacgctcatgg
gaggctgagagggtcatggagtggatgaaaagtcaggaatgggggctcattatactagat
gaggtgcacacaatcccagcaaagatgttccgtcgtgttctgacgatagtccaggctcac
tgtaaactgggtctcactgccacgttggtgagagaggatgataagattgtcgatcttaac
ttcctgattgggccgaagctctacgaggcgaattggatggaactacagaacaatggttat
attgctaaagtccagtgtgctgaggtatggtgtcccatgtctcctgagttttatcgtgaa
tatgtggctattaagacgaagaagagaattctgctctacaccatgaatcccaataagttc
cgcgcgtgtcagttcctgatccgcttccacgagcggagaaacgacaagatcatcgtcttt
gccgacaacgtcttcgctctgaaagaatacgccatccgactgaacaaaccatatatttat
ggacccacatctcaaggagaacgtatgcagatccttcagaactttaaacacaatcccaaa
atcaataccatattcatctccaaggtaggagatacttcatttgacctgccggaggcaaac
gtgctaatccagatctcctctcacggtggttctcgtcgtcaggaagctcagagactgggc
cgagtgctgcgagccaagaaaggtatggttgcagaggaatacaatgcttacttttactca
ctcgtctctcaggacacacaggaaatggcttattccaccaagagacagcgcttcctggtg
gaccagggatacagtttcaaggtgatcacaaaattggctgggatggaggaggaagacctg
atgttttcctctcgtgaggaacagcagcagctcctacagaaagttctggcagcatcagat
cttgacgcagaagaggaagttgtgatgggagacgtgggaggaaagccacagttttctcgc
cgtgctggaactatgagctccatgtctggtgcagatgataccgtctacatggaataccag
acgtcccgcagcggcaagtctttagtcggcaagaacatccatcctctgtttaaacgcttc
cgcaagtga
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