Puntigrus tetrazona (Sumatra barb): 122347250
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Entry
122347250 CDS
T08985
Symbol
trim25
Name
(RefSeq) E3 ubiquitin/ISG15 ligase TRIM25 isoform X1
KO
K10652
tripartite motif-containing protein 25 [EC:
2.3.2.27
]
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
122347250 (trim25)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ptet04121
]
122347250 (trim25)
Enzymes [BR:
ptet01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122347250 (trim25)
Ubiquitin system [BR:
ptet04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
122347250 (trim25)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SPRY
PRY
zf-C3HC4_4
zf-RING_UBOX
zf-RING_2
zf-B_box
zf-C3HC4
zf-C3HC4_2
ANCHR-like_BBOX
zf-C3HC4_3
zf-RING_5
RING_XB3-XBAT31
PyrI_C
Motif
Other DBs
NCBI-GeneID:
122347250
NCBI-ProteinID:
XP_043098361
LinkDB
All DBs
Position
6:complement(10039427..10048868)
Genome browser
AA seq
682 aa
AA seq
DB search
MAENMSLLGLEDELTCSICLCLFENPVSLICGHSFCANCLEATWNDTTSSLSCPQCRMVF
SSKPELKKNTVLGAVLDAYRIKAGVSEPVKEHFEVKKKDPDAIKCDNCMEAKAVKTCLTC
MASYCEDHVRPHRENAVFRAHQLSDPLPDLMERLCSNHGKLMEFYCNQHQSCMCSACLQD
VHKGCEFVTADERRYKQKTDLTDKLNLLDVKTDKNQQVITQMKEQQIKLKDLATTRKRIL
EAEYRQIREMIERDEKEAMLAIDKEQEKGQIKLVSLMKKFNENIEKMSRTKSEINILLDQ
SQSLAFLKASVDLPSVVNFEPHNPRMNVEGKEVIAYHSTAVALKEWITKLMEKPLENRIC
VLKPEFEKSVLDAGLGIKFPVIPSDIPALLPNPNPIWMQKAPIMWHEPTPHLRPPSPSRG
LKTKPSGTKQKNTSKTAKDQKDHKEHKDQKPNKTRNPSKGANPVFSKSMENLLDITTKTV
DMPDINSLAISPAVQNFVKRSDLLKCGAVLNFDVRTAHKRISLSENNTKATVSDDPAHYP
DIPLRFSVCSQVLCTKGFSQGRHYWEIKMSSNNFCGLGLAYGRIDRKGPSSRLGRNADSW
CVEWFNVKLSAWHNSVETVLQNPNPSRVGVLLDCDQGSATFYTVQDRAYPFHTFVFPFTE
AVYPAFWIFSNGSSVSLCKLSN
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atggcggaaaacatgtctctgctcggtctcgaggacgagttgacttgcagtatctgttta
tgtctattcgagaacccggtgagtttaatctgtggacacagtttctgcgccaactgtctc
gaagcgacgtggaacgacacgacatcgtctctctcctgccctcagtgccgaatggtgttc
tcaagtaaacctgaactaaagaagaacaccgtcctcggcgcggtgctggacgcctacagg
ataaaagcaggtgtctctgaacccgtcaaggaacattttgaggtgaaaaagaaagatcca
gatgcgattaaatgcgacaactgcatggaagccaaagccgtcaaaacttgcctgacgtgt
atggcgtcttactgtgaggatcatgtcaggcctcaccgggagaatgccgtttttcgggcg
catcagctctctgatcctctgccagatctgatggagcgtctctgttcaaatcatggcaaa
ctgatggagttctactgcaatcagcaccagagctgcatgtgcagtgcctgtctgcaggac
gtgcataaaggctgtgagtttgtcacggcagatgagcgacgctacaagcaaaagactgat
ctgaccgacaaactcaacctccttgatgtaaaaacggacaagaatcagcaggttatcaca
caaatgaaggagcaacagatcaaattaaaggacctagctacaacccgcaaacgtattctt
gaggcggaatacaggcagattagagaaatgattgagcgagatgagaaagaagccatgctg
gctatcgataaggaacaggagaaaggtcagatcaaactggtctccttgatgaaaaaattt
aatgagaacatcgagaagatgagtaggaccaaatctgagatcaacattctgctggaccag
tcacagtcactagcgttcttaaaggcctccgtggatttgccctcggtggtaaattttgag
cctcataacccccgtatgaacgtggaaggtaaagaggtgatagcttatcattccactgca
gttgcactaaaggagtggatcaccaaattaatggagaagccgttagaaaacagaatctgt
gtacttaaaccagagtttgagaaatctgttcttgatgcaggtctaggaatcaaattccca
gtaatcccaagtgatattcctgccctcctgccaaatccaaatcctatatggatgcaaaag
gcaccaattatgtggcatgaacctacacctcatttgagacctcccagtccaagccgtggc
ctcaagaccaagccttcaggaactaaacagaaaaataccagcaagacagctaaagatcag
aaggatcacaaagagcacaaagaccagaagccaaacaaaactaggaatccctctaaagga
gcaaatcctgttttctccaaaagcatggaaaacttgcttgacatcacaactaaaactgta
gacatgcctgacataaattcacttgctatttcaccagccgtgcaaaactttgttaaacga
agtgaccttctgaaatgtggcgctgtcctcaattttgacgtcagaacagctcacaaacgg
atctcgctgtctgaaaacaacactaaagcgacagtctcggacgacccagctcattacccg
gatatcccccttcgcttttccgtctgttcccaggtgctctgcacgaagggtttctctcag
ggccgtcattattgggagatcaaaatgagcagtaacaacttctgcggattgggacttgca
tatggaagaattgatcgcaaaggtccctctagccggctggggcgcaatgcagactcctgg
tgtgtggagtggttcaacgtgaagctttctgcgtggcacaacagcgttgagaccgtgctg
cagaatcccaacccaagccgggtgggcgtcttgctggattgcgatcagggaagtgcgacg
ttctatactgtgcaagaccgggcctaccctttccacacttttgtctttcctttcactgag
gctgtgtatcccgctttctggatcttctcaaatggctcctctgtctctttgtgcaagctc
agcaactga
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