Puntigrus tetrazona (Sumatra barb): 122347366
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Entry
122347366 CDS
T08985
Symbol
col7a1
Name
(RefSeq) collagen alpha-1(VII) chain isoform X1
KO
K16628
collagen type VII alpha
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
fn3
VWA
VWA_2
Kunitz_BPTI
Pur_ac_phosph_N
Interfer-bind
Motif
Other DBs
NCBI-GeneID:
122347366
NCBI-ProteinID:
XP_043098498
LinkDB
All DBs
Position
6:complement(19677759..19736497)
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AA seq
3113 aa
AA seq
DB search
MGCLLKWILLLAVLLCLPSLSTAQGQCNNVVAADIVFLVDGSSSIGRANFMLVKNFMAGI
VKPFASVVGPSGIRFGTIQYSDTARVEFTFTTYLNGTELINAIENINYKGGNTRTGAGLK
YIADNFFSPSSIRDVPKITILITDGKSQDSVQEPSQKLRSLGVKIFAVGIKSADPAELNL
IASPPQRDFTSQIGNFKALSSLLPLVSRRVCITTGGSYSSDVSPSEAYSGPSNLQFSGET
TNSLRFRWTSAGGPVSGYVVQYRPLSSQGQPITAELRQETIPSNQQSYTARELHSGTDYL
ITVIAQYPNSLGESVSGKARTKPLQGVTALRLIQAGFFTLALGWDTLADQVQGYRITYRP
TGQPVAQLLEQSVGAESTSLTLVDLKADTEYVINLYPLFPRNSASPATLTVSTLRLEGVQ
QLSVETISSNSVRVRWTGVTGARGYRVVWGPFTGSDVETVELGGDSEFHTLGNLRPDTEY
IVTVIALYNGEAEGPAASARFKIERSEQQVLRATTTGPTSIRLNWNLIQAARGYRLEWKT
GERGRLQRQEFSKSTTNYELRNLQPNTEYIITLYTLYEGREEATFFSTKSTVEQQVGPVT
NLRVVDSLGNIIRLGWTGVSGATQYNIIILNTESNTEEKIRVPGNQTTLNLRDLEDGVRY
AVSVNALIGSNEGEAATVYIITEPPQRVTDLRIVGSNSRRVRIAWTGVSGATGYRVTWRQ
SNTAEQSRILAGDVSTFTIDGLQPDDSVVVGVAPVINGQTGEVVSVSTRTSGSTGIVTGL
RVTEVTSARIVINWTPVSRATGYKIMWRRSDGVEDSEIVPADVASYAIDRLQEGAAYQIL
VSALFNSREGPSATVTARTDQAVVGRVTNLQVVEAQGEVVRVTWVGVQNATSYRVLWKRT
DGGEERSQLVGGNVTSVDLRQLDEGAQYEVKVLALVRNREGPPVSVRVTTGGQRGTKVEG
LRVLDTTPGGLRITWRTVSGASSYRIYWRSSQGEPELNRLISGDTTSYTLDGLRPGLSYT
VRLSALVDGQETEATTIRATTDALPPVTGLSVTDSTENSVLLGWSSIAGATGYILRWTEE
EDTGAGQSETLPGTATSYRVTGLRLGRRYRFTLQTTFQNQVGPETSVEERTVCVGGRLDV
VFLVPASRDRSGLVGPVLSLLASSAGSFTSIGPRDSQVGVVMYSEDPKVSFLLNRHSNSE
TLLQDILTIPFNDRPGNNIGQAMTYARQFLLSAPAGRRYSVPGVVVIIADDKSTDDLSQP
AAAVRADGVTVLAVGIGRADSRELRSAVTDGSTQNLLYAQDANQLYGLHPDLADLLCGLA
RGTSVTPGPCNVQCPQGAKGEPGQKGERGRDGVDGRKGEPGRDGLPGREGLRGPEGPPGQ
PGSGLGVRGEKGERGFPGLDGSPGVPGRPGAVGLPGIQGLPGVRGDPGEPGNSGAQGLKG
EKGERGEPVGGGLPGRKGEPGIPGIPGTPGRQGVDGAKGEPGSQGLPGQDGRPGLPGTAG
LSIKGEKGSPGERGPPGVGSGVAAKGDAGEPGSAGPSGPQGPRGLTGQKGAKGEAGESIE
GKPGPQGNTGDPGDRGPRGPPGEIGSKGDRGQTGPAGSDGAKGDRGLPGPAGDKGDKGSA
GPPGPQGLRGFSGNSGLPGEKGADGEKGQPGSCDCQDSFGKKGERGEKGLPGPDGVKGDK
GGAGQKGERGAPGAGEPGQSGPKGDQGDRGLTGLSGKPGAKGSQGDLGERGEAGSPGPQG
PMGPKGKDGLKGDKGEDGIPGESGLAGKPGERGLRGLPGQSGQPGQKGDTGDPGEDGRNG
TPGPSGPRGPKGEQGIQGPPGPPGDVTSGEKQLKGDRGEKGEAGDPGEHGAKGQKGEAGA
SGPPGLSGPEGSRGLPGARGDQGDRGSPGDKGERGAAGLDGRPGQDGKPGAPGTPGLRGD
PGKQGDPGRDGLAGLRGPQGPPGPPGPPGANGTPGKAGEDGKPGLAGKSGEDGVPGEDGR
KGDKGESGPAGRDGRDGLKGDQGIAGPIGPQGPTGPPGVPGNVGPPGPVLYVKGEPAAAI
PGPQGPPGAPGVSGVPGASGQRGERGLPGLKGDVGDPGEDGRPGTVVDVKKALSEFGIEV
RELKLLVDDRSNLVSKLGELTEGKRGEKGDVGPRGPAGADGARGLPGERGVKGELGEKGP
PGPQGPPGRAIGERGPEGPPGQAGEPGKPGIPGVPGRAGELGEAGRPGDKGEKGEKGDRG
PAGPAGLPGLGGPPGPKGDSATAQSGLPGPRGLPGPQGIRGEAGPVGPPGPTGERGYTGP
RGEKGERGSSGESGKDGSPGSPGEPGKPGSDGKPGLPGFPGVLGRPGNSGEPGIRGPTGP
MGGNGPPGAPGVKGDQGESGIGVQGPPGPQGNRGLPGPPGTPGAIGPQGPPGLPGQVGEG
GKPGVPGRDGVPGKDGLPGLSGKQGIAGPIGPPGLKGEQGDSGPPGKSVTGPPGTKGEMG
PPGLTLPGTAGERGLSGPPGLKGDKGPAGIKGERGAAGDPGDPGENGLRGPPGPKGIKGE
AGVGMHGPPGQLGPIGLKGDPGFPGPPGPPGPRGLDGTPGLAGQRGEAGQPGPPGPPGDR
GLQGFIGKAGNPGTPGAVGPPGPPGTAGLAGLKGDKGEIGVGVPGLRGERGDPGPRGEEG
RAGTDGERGPTGPLGSKGNRGDKGEQGPSGTKGEKGDTQLVGGSPGEKGVKGETGERGPK
GAQGEKGAKGQEGPPGEQGLRGEPGERGSTGFQGARGPGGQKGEAGQPGVPGEAGTPGKD
GLPGMRGEKGEFGPVGSRGLKGERGAKGACGQSGPKGDKGDAGINGRPGLPGRKGEQGEV
GSPGPTGSPGKEGLIGAKGDRGFDGVTGPKGSQGEKGERGQPGIPGPPGLRGADGSPGLT
GPQGPAGGKGPEGLQGQKGERGPPGTAMVGPRGIPGIPGERGEQGEIGADGAKGDRGEPG
MTEDEIRSYVRSEMNLHCACGGVQEVEKPVPVQAYRSSSTSPERSLIQGDEEGQKLRVVM
NTNDPDYEHIYSIETYDDDAPVVEIADYDTTVNKSQGQTVSFDSLNAERTKFEVKGEDSC
ILPMEEGNCSRYTLRWYFNSEVGVCRPFIYSGCGGNANRFFQKEDCEQLCLQQ
NT seq
9342 nt
NT seq
+upstream
nt +downstream
nt
atggggtgtttgctgaaatggattttgctgcttgctgtgttgctgtgtctcccatcactg
tctacagctcaaggccagtgcaataatgttgttgcagcagacattgtgttcctagtagat
ggatcatcaagtattggacgggccaacttcatgttggtcaagaatttcatggcagggatt
gtcaaaccctttgccagtgtagtaggacccagtggcatccgttttggaaccatacaatac
agcgatactgccagggtggagtttacatttactacatacctgaatgggactgagctcata
aatgccattgagaatatcaactataaaggaggaaacacacgtaccggggcaggtctcaaa
tacattgcagacaactttttcagcccttcctctatcagagatgtacccaagatcactatt
ctcattactgatggcaaatctcaggacagtgtgcaggagccttctcaaaaactacgtagc
cttggagtgaaaatatttgcagtgggaataaagagtgcagacccagctgagctgaatctc
attgcttctcctcctcaaagggacttcacctctcagattgggaattttaaagctctcagc
tctttgctgcccctagtgtctcgacgtgtgtgtataacaactggaggctcttactcaagt
gacgtttcaccatcagaggcctacagtggtccatcaaacttgcagttttcaggtgagacc
accaattcactgagatttcgatggacgtctgcaggagggcctgtaagtggctatgtggtc
cagtacaggcccttatctagccagggtcagccaatcacagcagagcttcgacaggaaaca
ataccaagcaaccagcagagctacactgcacgagagctgcattcaggcacagactacctg
atcactgttattgctcagtacccaaacagcttgggagagtcagtgtctggcaaggcccga
acaaagcctctccaaggtgtgactgcactgcgactgatccaggctggattttttactctg
gctttgggctgggacactctagctgaccaagtacagggttacagaatcacctatagacct
acaggtcagcctgttgcacagctgctggaacaatctgttggggctgagtctacttctctg
actttggtcgatctgaaggcagacacagaatatgtaatcaacttatacccactgtttccc
cgtaacagtgcctccccagctaccctgactgtcagtacattgcgtttagagggagtgcag
cagctttctgttgagactatctcaagcaacagtgttcgagttcgctggacaggagtgaca
ggggccagaggatatagagtcgtttggggccctttcacaggaagtgatgtggagaccgta
gaactgggaggtgatagtgaatttcacactctggggaatctgagaccggacacagagtac
atcgttacagtcattgctctgtacaatggagaagctgaaggaccagcagccagtgcacgt
tttaagatagagcgctcagagcaacaggtcctgagagccacgactacgggacccactagc
atcagattaaactggaacctcatacaggccgccagaggctacagactggaatggaaaacc
ggagagagaggcagacttcagaggcaagagttctcaaaaagcaccaccaactatgagctc
agaaatctgcagccgaatacagagtacatcataactctatacacgctctacgaggggcga
gaagaagctactttcttttcaaccaaatccacagtagagcagcaagttggtcctgtcaca
aacctgagggtggttgattcactcggaaacattattcgattaggatggacaggagtctct
ggggcaacacaatacaacatcatcattcttaatacagaatcaaatacagaggagaagata
agagttcctgggaatcagaccaccttgaatctacgggatcttgaagatggtgtgcgctat
gctgtaagtgtaaatgcactaattggatccaatgaaggggaagctgcaacagtgtacatc
ataacagaaccaccacagagggtgaccgacttacggatagttgggagcaacagtcgtcga
gtcaggattgcatggactggtgtttctggggcaacaggctaccgtgttacctggagacaa
agcaacactgcagagcaatcccgtatcctagctggcgatgtcagtactttcactatagac
gggctgcagccagatgattctgttgttgtgggtgttgctccagtaattaatgggcagact
ggagaagtggtctctgtgtctacaagaaccagtggatctactggaattgttacagggcta
agagtcactgaagttacatctgcaaggatagtaataaattggactcctgtgtctagagca
acaggctataaaataatgtggcggcgaagtgatggagtggaagactctgagattgtacct
gctgatgtggcttcctatgccatcgatagactccaggaaggtgcagcctaccaaatatta
gtctcagccctttttaactcgcgggaagggccttcagccactgtgactgcaaggacagat
caggccgtagtgggtcgcgtcaccaatttacaggtggtggaggcccaaggggaggttgtt
cgagtcacctgggttggagttcaaaacgcaacttcatacagagtactctggaaaaggact
gacggtggagaggagaggagtcagctggtaggtggtaacgtgacctcagtggatctgagg
cagctggatgaaggggcacaatatgaagtaaaggttctggctctggttcggaacagagaa
ggcccacctgtctccgtcagagtcactacaggtggccagagagggacaaaggtagagggt
ttgcgtgttttggacacgaccccaggggggctccgtataacctggagaacagtgagtgga
gccagctcatatcgaatctactggagatcctcacaaggtgaacctgaattaaatcgtctg
attagtggcgatacaacttcatacacccttgatgggcttcgtccaggtctgagctacact
gtaagactgtctgctttggtggacggtcaagaaaccgaagctaccaccatcagagcaacc
actgatgccctgccacctgtgactggtttgagtgtgacagacagtactgagaattcagtc
ctgttaggctggtcgtcaatagcaggagccacaggatatattttacgctggacagaggaa
gaagacacaggagcgggccagtctgaaacgctgcctggtacagccacatcttaccgtgtg
acaggtctaagactgggccgtcggtaccgtttcacactgcagaccaccttccaaaaccag
gttggacctgagaccagtgtggaggaacgcacagtgtgtgtgggagggcgtttggatgtt
gtcttccttgtccctgcatctcgtgatcgctctggcctggtgggacctgtgttgtctctg
ctcgccagttctgctggatcctttacttccatcggacccagagactcccaggtgggggtg
gtgatgtacagtgaagatccaaaagtgagcttcctcctcaatcgtcatagcaacagtgag
acccttctgcaggatattttgaccatcccattcaatgacagaccaggaaataatataggt
caggcaatgacatacgcacgtcagtttttgctaagcgcaccagccgggcgaaggtatagc
gttcccggagttgtcgttattatcgctgacgacaagtcaaccgatgatcttagccagccg
gctgctgctgttagagccgatggtgtgacagtgttggctgtaggaattggacgtgcagac
tctagagagttgcgttcggcagtgacggatggcagcactcagaatctgctctatgctcaa
gacgcaaatcagctctatggtctccaccccgacctggcagacctcctctgtggccttgca
cgtgggactagtgtcacgccagggccttgcaacgtacagtgtccacagggtgctaaaggg
gaacctggtcagaagggtgagaggggcagagatggagtggatggaagaaaaggcgagcct
ggtcgtgatggtttacccggtcgtgagggtctcagaggacctgaggggccaccaggtcaa
ccaggcagcggtctgggagtgagaggagagaaaggcgagagaggttttccaggactggat
ggcagtccgggtgttccaggtcgtcctggagcagttggattaccaggcattcagggatta
ccaggtgtaagaggagaccctggagaaccaggcaattcaggcgctcagggattaaaggga
gagaaaggtgaaaggggagaaccagttggaggaggtttaccaggccgtaaaggagagcca
ggaataccagggatccctggcactcctggtcgtcaaggtgtggatggggcaaagggagag
ccaggttcacaaggtctgcctggacaggatggtcgccccgggttgccaggcactgctgga
ctttctattaagggtgaaaaaggcagccctggtgagaggggtcctcctggagtgggtagt
ggggtagctgctaaaggagatgcaggtgaacctggaagtgctggaccatctggtcctcag
ggcccacgaggactgactggacaaaaaggagccaaaggagaagctggtgagagtattgag
ggtaaaccaggcccccaaggtaacaccggagaccctggtgatcggggtcctcgaggacct
cctggtgaaattggaagtaagggtgatcgaggacaaactggaccagctggttcagatggc
gccaagggagacaggggccttccaggtccagcaggagacaagggagataaaggttcagca
ggcccccctggacctcaaggactgaggggattttcagggaacagcggccttcctggagaa
aagggtgctgacggtgaaaaagggcaaccaggaagctgtgactgtcaagattcatttggg
aagaaaggagagcggggtgaaaagggcctcccaggtcccgatggtgttaaaggtgataaa
ggaggtgctggacaaaaaggggaaaggggtgcccctggagcaggagagcctgggcaatcc
ggacctaaaggggaccagggtgatcggggtctcactggattgtctggaaaacctggtgcg
aagggcagtcaaggtgacctgggggagagaggggaggcaggaagtcctggtccacagggg
cccatgggccccaaagggaaagatggactaaaaggagacaaaggagaggatggcattcca
ggagaatccgggttggcgggtaaaccaggggagagaggtctaagaggactgccaggtcaa
tcaggtcaacctgggcaaaagggagacaccggtgatccaggggaagatggaagaaatggt
accccaggtccatccggaccaagaggtccaaagggagagcagggaatacaaggtccccct
gggccacctggtgatgtgacatctggagagaaacaactgaaaggtgatagaggagaaaag
ggagaggcaggtgatccaggggagcatggggctaaaggtcaaaagggtgaagcaggagct
tcaggcccaccaggactaagtggtcctgaagggtcacgtggactaccaggagccagaggt
gaccaaggcgataggggcagtccaggagacaagggagaaagaggagcggctggtttggat
ggacgacccggtcaggatgggaaacctggggcgcctggaactcctggattacggggtgat
ccaggaaaacaaggggatcctggaagagatggcttggctggactaagagggcctcagggg
cctcctggaccacctgggcccccaggagctaatggcacacctggtaaagcaggggaggat
ggaaaaccaggactggctggaaaatctggtgaggatggcgtgccaggagaggatggtcga
aagggagataaaggagagtctgggcccgctggaagagatggtcgagatgggttgaaaggt
gatcagggcatcgcaggacctattggcccacaaggtcccactgggccccctggagttcct
ggaaatgtcggaccgccaggacctgtgctgtatgttaaaggggagccagcagcagctatt
ccaggtccccagggccctccaggagcccctggagtatctggagttccaggagcttctgga
caaagaggggagagaggtctgccaggcttgaagggagatgtgggtgatccaggagaggat
ggcagaccaggaactgtagtggatgtgaagaaagctttgtcagaatttggcattgaggtc
agagaactgaaactattagttgatgacagaagcaatctagtatcaaagttgggtgaactg
acagagggaaagaggggagaaaaaggagatgttggacccagaggcccggcaggagcagat
ggtgcacggggtcttccgggtgaacgaggtgtgaaaggagagctgggtgagaaaggacct
cctggcccacagggtcctccaggcagggcaattggagaaagaggcccagaaggtccacca
ggacaggcaggtgaacccggaaagccaggaataccaggagtacctggacgagccggtgaa
cttggagaagctggcagacctggggacaagggggagaaaggggagaaaggggacagaggg
ccagctggtcccgctggattgcctggcctaggggggcctccaggaccaaagggtgattct
gccacagctcagagtggtttgcctggtccaaggggtcttccaggcccccaaggtatcaga
ggagaggctggtccagtaggacctcctggacctacaggagagcgaggctacacaggtcct
cgtggggagaagggagaaagaggatccagtggagaaagtggaaaagatggctccccagga
agtccaggagagccaggaaaaccagggtcagatgggaagccgggcttgcctgggttccca
ggagtgctgggcagaccggggaattcaggagaaccaggaataagaggacctaccggacct
atgggtggaaatggacccccaggggctcctggtgtgaagggtgaccaaggagaatcaggc
attggagttcaaggccctcctggacctcagggcaacagagggttacctggacctccaggc
actccaggagcaataggaccacaaggacctccagggcttccaggacaagtgggagagggg
ggcaagcctggggtcccagggagagacggtgttccagggaaagatggcctgccagggtta
tctgggaaacagggtatcgccggacccatcggccccccaggattaaaaggagagcaagga
gacagcggtccaccaggaaagtctgtcaccggaccccctggaacgaagggtgagatgggt
cctcctggtctgacattgccaggtacagctggagaaagaggcctttctggaccaccaggt
ctaaaaggagacaaagggccagcgggaatcaaaggagaaagaggtgctgcaggtgatcct
ggagatcctggtgagaatggattgagaggaccaccagggcccaaaggaatcaaaggcgag
gcaggtgtgggaatgcatggtcctccaggacaacttggacccatcggcttaaagggtgac
cctgggttcccaggtcctccgggccctccaggaccacgtggattggacggcacgccagga
ctggcagggcagagaggtgaagcaggtcagccaggacctcctggaccaccaggagacagg
ggtctacaaggatttattggcaaggctggaaacccaggaacaccaggagctgttgggccc
ccaggaccccctggtactgcgggccttgcgggactgaagggcgataagggtgaaattggt
gtaggagtgccaggtttaagaggagagcgaggagacccagggcctcggggagaagaaggt
cgagctggaacagatggagagagaggccctactggtcctcttggcagcaaaggaaacaga
ggagataagggtgaacaaggtccttcaggaacgaaaggagaaaagggagatactcagctg
gtggggggatctccgggagagaaaggagtgaaaggagaaaccggggagcgaggacctaaa
ggtgcacagggtgaaaagggtgcaaagggacaggaaggaccaccaggagaacagggtctg
agaggggagcctggagaaagaggatctactggcttccagggagcccgtggtcctggaggt
caaaagggagaagcagggcagccaggtgtcccaggagaagcaggaacacctggtaaagat
ggtctgcctggaatgagaggagagaagggagagtttgggcccgtaggttcgcgaggcctc
aagggagaacgaggcgccaagggagcatgtggacaaagtggaccaaagggagacaagggg
gatgctgggattaatggcagaccgggattgccagggaggaaaggagagcagggcgaagtc
gggtctccgggtcccacaggaagtccagggaaggagggactcattggagccaagggtgac
agaggctttgatggagtgacggggccgaagggatcacaaggagagaaaggtgaacggggt
caacctggtatccctggcccccctggtctaagaggagcggatggatcccctggtctaaca
ggccctcaaggacctgctggaggtaaaggtccagagggcctgcaaggacaaaagggtgaa
agaggtcctccaggcactgctatggttggcccacgtggcatccctgggatcccaggagaa
agaggagaacagggtgagattggcgctgatggagctaaaggagacagaggagaaccaggc
atgacggaggatgagattcggtcttatgttcgaagtgagatgaacctgcattgtgcttgt
ggaggtgttcaggaagttgagaaacctgtaccagtgcaggcttaccgaagctcctccacg
tcccctgagcgctcactaatccaaggggacgaggagggtcaaaagctgcgtgttgtgatg
aacacaaatgatccagactacgagcacatttactctatagagacctatgacgatgatgct
ccagtggtggagattgctgactatgacaccactgtcaataaaagccagggtcaaaccgtc
tcttttgattctttaaatgctgaaaggacaaaatttgaggtgaaaggtgaagactcctgc
atcttgcccatggaagagggtaattgttcccgctatactttgcgctggtactttaactct
gaggtgggcgtctgtagaccttttatctacagcggctgtggaggaaacgctaaccgcttt
tttcagaaggaagactgtgagcaactctgtctacagcagtaa
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integrated database retrieval system
